EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7797078 lines in total Total number of methylation call strings processed: 15594156 Final Cytosine Methylation Report ================================= Total number of C's analysed: 151781122 Total methylated C's in CpG context: 5915753 Total methylated C's in CHG context: 746213 Total methylated C's in CHH context: 1797219 Total C to T conversions in CpG context: 15089108 Total C to T conversions in CHG context: 31172597 Total C to T conversions in CHH context: 97060232 C methylated in CpG context: 28.2% C methylated in CHG context: 2.3% C methylated in CHH context: 1.8%