EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7635088 lines in total Total number of methylation call strings processed: 15270176 Final Cytosine Methylation Report ================================= Total number of C's analysed: 169475057 Total methylated C's in CpG context: 6721143 Total methylated C's in CHG context: 1081552 Total methylated C's in CHH context: 3482873 Total C to T conversions in CpG context: 15986854 Total C to T conversions in CHG context: 34252524 Total C to T conversions in CHH context: 107950111 C methylated in CpG context: 29.6% C methylated in CHG context: 3.1% C methylated in CHH context: 3.1%