CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 108742 151154 41.84 259896 2 100176 164610 37.83 264786 3 104240 159324 39.55 263564 4 111123 149717 42.60 260840 5 108460 133541 44.82 242001 6 106650 113178 48.52 219828 7 118519 109623 51.95 228142 8 61989 125804 33.01 187793 9 56025 118040 32.19 174065 10 56740 114087 33.21 170827 11 60164 118383 33.70 178547 12 57708 117061 33.02 174769 13 57363 118513 32.62 175876 14 55025 120525 31.34 175550 15 54174 120883 30.95 175057 16 51112 120782 29.73 171894 17 48290 117718 29.09 166008 18 49897 120057 29.36 169954 19 48885 120227 28.91 169112 20 49797 121344 29.10 171141 21 49692 121547 29.02 171239 22 48642 119827 28.87 168469 23 48395 119885 28.76 168280 24 47819 119690 28.55 167509 25 47317 118683 28.50 166000 26 46602 118313 28.26 164915 27 46738 120316 27.98 167054 28 47734 120638 28.35 168372 29 46463 118894 28.10 165357 30 45971 120471 27.62 166442 31 46929 119301 28.23 166230 32 46439 117365 28.35 163804 33 46528 118792 28.14 165320 34 47217 118870 28.43 166087 35 46480 118718 28.14 165198 36 46012 119697 27.77 165709 37 45588 116298 28.16 161886 38 44470 116123 27.69 160593 39 45640 116957 28.07 162597 40 45047 114807 28.18 159854 41 44933 116406 27.85 161339 42 46478 118046 28.25 164524 43 45530 116317 28.13 161847 44 44882 116525 27.81 161407 45 45601 115619 28.28 161220 46 45991 115628 28.46 161619 47 45040 114046 28.31 159086 48 45006 114538 28.21 159544 49 45948 115398 28.48 161346 50 44863 115114 28.04 159977 51 45044 114841 28.17 159885 52 45810 116408 28.24 162218 53 44629 112885 28.33 157514 54 43910 112387 28.09 156297 55 43545 111146 28.15 154691 56 43628 111205 28.18 154833 57 43523 112092 27.97 155615 58 43625 111639 28.10 155264 59 43680 110342 28.36 154022 60 42530 111072 27.69 153602 61 43190 109782 28.23 152972 62 42257 108675 28.00 150932 63 42019 108834 27.85 150853 64 41464 108230 27.70 149694 65 41719 108160 27.84 149879 66 42446 107571 28.29 150017 67 41570 106263 28.12 147833 68 41587 105850 28.21 147437 69 41142 105793 28.00 146935 70 40885 104972 28.03 145857 71 39758 103058 27.84 142816 72 39753 102682 27.91 142435 73 39162 101551 27.83 140713 74 38892 101538 27.69 140430 75 38434 100871 27.59 139305 76 38269 99959 27.69 138228 77 38516 99680 27.87 138196 78 38451 98871 28.00 137322 79 37856 98734 27.72 136590 80 37212 97881 27.55 135093 81 36750 97040 27.47 133790 82 35746 95121 27.31 130867 83 36968 95628 27.88 132596 84 35930 95440 27.35 131370 85 36035 93926 27.73 129961 86 34933 92002 27.52 126935 87 34072 91805 27.07 125877 88 34610 91954 27.35 126564 89 34010 90366 27.34 124376 90 33725 90419 27.17 124144 91 32967 88362 27.17 121329 92 32810 88538 27.04 121348 93 32643 88574 26.93 121217 94 32507 87418 27.11 119925 95 31785 85779 27.04 117564 96 31523 85502 26.94 117025 97 30769 82507 27.16 113276 98 28929 78528 26.92 107457 99 22559 61139 26.95 83698 100 29484 77674 27.51 107158 101 27393 78267 25.93 105660 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 129600 273134 32.18 402734 2 76444 255569 23.02 332013 3 42549 246513 14.72 289062 4 29590 248910 10.62 278500 5 20656 222272 8.50 242928 6 15395 213743 6.72 229138 7 14165 258853 5.19 273018 8 7381 276169 2.60 283550 9 6510 263000 2.42 269510 10 6656 256158 2.53 262814 11 6734 257115 2.55 263849 12 6318 253978 2.43 260296 13 5872 249647 2.30 255519 14 5620 247224 2.22 252844 15 5433 252186 2.11 257619 16 5005 252771 1.94 257776 17 4927 248405 1.94 253332 18 4865 246271 1.94 251136 19 4878 247184 1.94 252062 20 4924 256539 1.88 261463 21 4951 258216 1.88 263167 22 4801 255385 1.85 260186 23 4885 260281 1.84 265166 24 4714 262205 1.77 266919 25 4587 256270 1.76 260857 26 4943 256936 1.89 261879 27 4587 260686 1.73 265273 28 4644 257501 1.77 262145 29 4808 261499 1.81 266307 30 4552 262411 1.71 266963 31 4532 257051 1.73 261583 32 4535 261024 1.71 265559 33 4748 260896 1.79 265644 34 4795 257441 1.83 262236 35 4979 258572 1.89 263551 36 4700 259766 1.78 264466 37 4655 253111 1.81 257766 38 4984 258190 1.89 263174 39 4585 256424 1.76 261009 40 4645 256051 1.78 260696 41 4672 255034 1.80 259706 42 4511 256930 1.73 261441 43 4580 252825 1.78 257405 44 4771 257002 1.82 261773 45 4833 255921 1.85 260754 46 4673 253480 1.81 258153 47 4961 253508 1.92 258469 48 4853 257338 1.85 262191 49 4758 251192 1.86 255950 50 4970 250819 1.94 255789 51 4797 253601 1.86 258398 52 4929 252471 1.91 257400 53 4914 250071 1.93 254985 54 5010 251388 1.95 256398 55 4951 249597 1.95 254548 56 5071 251883 1.97 256954 57 4988 249281 1.96 254269 58 4921 245731 1.96 250652 59 5175 247520 2.05 252695 60 5098 248120 2.01 253218 61 4949 243818 1.99 248767 62 4972 245066 1.99 250038 63 5008 243196 2.02 248204 64 5059 241221 2.05 246280 65 5476 242285 2.21 247761 66 5001 237643 2.06 242644 67 5040 235154 2.10 240194 68 5146 234935 2.14 240081 69 4971 234006 2.08 238977 70 4846 229577 2.07 234423 71 4889 229813 2.08 234702 72 4794 228947 2.05 233741 73 4968 226518 2.15 231486 74 5076 224489 2.21 229565 75 4946 224499 2.16 229445 76 4732 218769 2.12 223501 77 5049 218850 2.26 223899 78 4610 217034 2.08 221644 79 4643 213600 2.13 218243 80 4632 212562 2.13 217194 81 4670 209927 2.18 214597 82 4570 207758 2.15 212328 83 4780 209297 2.23 214077 84 4816 209683 2.25 214499 85 4868 205051 2.32 209919 86 4736 203101 2.28 207837 87 4679 205431 2.23 210110 88 4717 201095 2.29 205812 89 4629 199441 2.27 204070 90 4534 198196 2.24 202730 91 4462 196523 2.22 200985 92 4540 196316 2.26 200856 93 4702 194172 2.36 198874 94 4465 190279 2.29 194744 95 4446 187941 2.31 192387 96 4474 186971 2.34 191445 97 4193 172476 2.37 176669 98 3845 157280 2.39 161125 99 2279 102309 2.18 104588 100 2607 104352 2.44 106959 101 5420 171787 3.06 177207 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 207902 407703 33.77 615605 2 115767 423756 21.46 539523 3 73824 455125 13.96 528949 4 66211 493700 11.83 559911 5 62090 558586 10.00 620676 6 51187 606841 7.78 658028 7 45920 733019 5.90 778939 8 28688 780676 3.54 809364 9 22217 727226 2.96 749443 10 21981 707697 3.01 729678 11 24624 710265 3.35 734889 12 21592 711608 2.94 733200 13 22924 719317 3.09 742241 14 24595 738039 3.23 762634 15 21641 752152 2.80 773793 16 21125 760600 2.70 781725 17 24196 768144 3.05 792340 18 21543 793294 2.64 814837 19 21525 805296 2.60 826821 20 24118 832299 2.82 856417 21 21258 833884 2.49 855142 22 22305 838412 2.59 860717 23 24419 843357 2.81 867776 24 21818 844169 2.52 865987 25 22222 844524 2.56 866746 26 24816 854307 2.82 879123 27 21383 857988 2.43 879371 28 21157 861252 2.40 882409 29 24359 861180 2.75 885539 30 21291 854621 2.43 875912 31 21893 846774 2.52 868667 32 23600 846295 2.71 869895 33 21126 848895 2.43 870021 34 22983 852762 2.62 875745 35 23808 845060 2.74 868868 36 21408 854871 2.44 876279 37 21458 845206 2.48 866664 38 23724 849125 2.72 872849 39 20641 843370 2.39 864011 40 21378 837212 2.49 858590 41 23726 843701 2.74 867427 42 21270 845238 2.45 866508 43 22266 840581 2.58 862847 44 23594 844595 2.72 868189 45 21009 839126 2.44 860135 46 21536 839781 2.50 861317 47 23157 836854 2.69 860011 48 20711 837754 2.41 858465 49 21081 829808 2.48 850889 50 22847 828018 2.69 850865 51 20158 822006 2.39 842164 52 21488 817027 2.56 838515 53 22746 813086 2.72 835832 54 20760 811416 2.49 832176 55 21049 804312 2.55 825361 56 22821 803031 2.76 825852 57 20303 805406 2.46 825709 58 20911 804991 2.53 825902 59 22977 805272 2.77 828249 60 20048 798925 2.45 818973 61 20970 794521 2.57 815491 62 22183 785938 2.75 808121 63 20138 780509 2.52 800647 64 21215 775238 2.66 796453 65 22183 772109 2.79 794292 66 19799 766839 2.52 786638 67 20044 764075 2.56 784119 68 21879 760589 2.80 782468 69 19174 758554 2.47 777728 70 19799 749056 2.58 768855 71 21666 747018 2.82 768684 72 19529 745631 2.55 765160 73 20629 731910 2.74 752539 74 21140 733234 2.80 754374 75 19001 725958 2.55 744959 76 19177 724806 2.58 743983 77 21147 718156 2.86 739303 78 18387 712853 2.51 731240 79 18424 707745 2.54 726169 80 20415 702813 2.82 723228 81 18579 694647 2.60 713226 82 19192 689221 2.71 708413 83 20114 688219 2.84 708333 84 18157 678024 2.61 696181 85 18642 667779 2.72 686421 86 19470 662179 2.86 681649 87 17686 658025 2.62 675711 88 18154 651152 2.71 669306 89 19174 645809 2.88 664983 90 17145 641245 2.60 658390 91 17394 634434 2.67 651828 92 18565 630340 2.86 648905 93 16689 624547 2.60 641236 94 17049 614194 2.70 631243 95 18320 608563 2.92 626883 96 16096 597813 2.62 613909 97 15955 582118 2.67 598073 98 16281 542652 2.91 558933 99 10198 373524 2.66 383722 100 9672 333448 2.82 343120 101 16307 547976 2.89 564283 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 96616 107934 47.23 204550 2 84846 93147 47.67 177993 3 94597 107046 46.91 201643 4 87561 121971 41.79 209532 5 38774 158642 19.64 197416 6 23468 85775 21.48 109243 7 20731 88626 18.96 109357 8 21854 81651 21.11 103505 9 19307 72641 21.00 91948 10 21314 79541 21.13 100855 11 22698 76804 22.81 99502 12 22079 72805 23.27 94884 13 22450 72684 23.60 95134 14 23791 73942 24.34 97733 15 23109 68281 25.29 91390 16 21876 64545 25.31 86421 17 25649 69896 26.84 95545 18 25137 69453 26.57 94590 19 23720 67316 26.06 91036 20 22262 64185 25.75 86447 21 23165 62865 26.93 86030 22 22886 63865 26.38 86751 23 21782 61896 26.03 83678 24 20471 58828 25.81 79299 25 22434 62158 26.52 84592 26 20787 58120 26.34 78907 27 22346 59672 27.25 82018 28 20677 56279 26.87 76956 29 20903 58224 26.42 79127 30 20299 54872 27.00 75171 31 19550 55080 26.20 74630 32 19016 51505 26.97 70521 33 21505 53884 28.53 75389 34 20111 55585 26.57 75696 35 23915 58646 28.97 82561 36 20419 52500 28.00 72919 37 20890 53846 27.95 74736 38 18641 51534 26.56 70175 39 19261 50881 27.46 70142 40 20943 51198 29.03 72141 41 18521 50562 26.81 69083 42 18697 51207 26.75 69904 43 18593 49528 27.29 68121 44 17800 48135 27.00 65935 45 21047 51661 28.95 72708 46 17136 45253 27.47 62389 47 17326 46011 27.36 63337 48 17324 46715 27.05 64039 49 16968 46272 26.83 63240 50 16142 43376 27.12 59518 51 16013 43042 27.12 59055 52 16051 43626 26.90 59677 53 15996 42375 27.40 58371 54 16112 42691 27.40 58803 55 15979 42709 27.23 58688 56 14946 41223 26.61 56169 57 15855 41567 27.61 57422 58 15547 40594 27.69 56141 59 14843 38872 27.63 53715 60 15078 39702 27.52 54780 61 13844 37385 27.02 51229 62 13593 37495 26.61 51088 63 14513 37285 28.02 51798 64 14056 37043 27.51 51099 65 13116 34698 27.43 47814 66 13944 35883 27.98 49827 67 13164 36746 26.38 49910 68 13936 37389 27.15 51325 69 12888 34128 27.41 47016 70 12223 33708 26.61 45931 71 12857 32984 28.05 45841 72 11965 32494 26.91 44459 73 12489 33196 27.34 45685 74 11306 31573 26.37 42879 75 11274 31403 26.42 42677 76 11604 30753 27.40 42357 77 11166 30672 26.69 41838 78 11252 30288 27.09 41540 79 10640 29754 26.34 40394 80 10704 29737 26.47 40441 81 10523 29243 26.46 39766 82 10779 29033 27.07 39812 83 10683 28120 27.53 38803 84 11385 30141 27.42 41526 85 10172 27856 26.75 38028 86 10009 27641 26.58 37650 87 9870 26692 27.00 36562 88 10051 26655 27.38 36706 89 10458 27515 27.54 37973 90 10332 26967 27.70 37299 91 9613 26312 26.76 35925 92 9224 25491 26.57 34715 93 9401 25349 27.05 34750 94 9757 25800 27.44 35557 95 9298 25211 26.94 34509 96 9227 24875 27.06 34102 97 9722 26066 27.17 35788 98 8798 23468 27.27 32266 99 7765 0 100.00 7765 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 31266 143191 17.92 174457 2 33577 149127 18.38 182704 3 31302 151839 17.09 183141 4 33115 158738 17.26 191853 5 5125 292221 1.72 297346 6 4418 354804 1.23 359222 7 2610 194632 1.32 197242 8 2907 204736 1.40 207643 9 2430 171062 1.40 173492 10 2422 163282 1.46 165704 11 3449 212208 1.60 215657 12 2650 173187 1.51 175837 13 2744 170518 1.58 173262 14 2596 164589 1.55 167185 15 2554 158450 1.59 161004 16 2344 148478 1.55 150822 17 2675 156249 1.68 158924 18 2600 140564 1.82 143164 19 2329 137666 1.66 139995 20 2183 136363 1.58 138546 21 2494 131063 1.87 133557 22 2453 140553 1.72 143006 23 2314 139492 1.63 141806 24 2056 125977 1.61 128033 25 2141 128235 1.64 130376 26 2220 133850 1.63 136070 27 2228 125339 1.75 127567 28 1971 120533 1.61 122504 29 2154 126894 1.67 129048 30 2053 123427 1.64 125480 31 1958 118694 1.62 120652 32 2001 120256 1.64 122257 33 2241 136679 1.61 138920 34 1974 117654 1.65 119628 35 1997 119933 1.64 121930 36 1975 119950 1.62 121925 37 1839 111615 1.62 113454 38 2000 115749 1.70 117749 39 1803 108764 1.63 110567 40 1877 106897 1.73 108774 41 1806 105366 1.69 107172 42 1775 100548 1.73 102323 43 1770 103213 1.69 104983 44 1756 102829 1.68 104585 45 1697 96635 1.73 98332 46 1684 97475 1.70 99159 47 1699 99441 1.68 101140 48 1682 96069 1.72 97751 49 1717 99257 1.70 100974 50 1771 95663 1.82 97434 51 1577 90579 1.71 92156 52 1534 88435 1.71 89969 53 1727 97808 1.74 99535 54 1594 90171 1.74 91765 55 1573 88369 1.75 89942 56 1525 89164 1.68 90689 57 1633 84968 1.89 86601 58 1476 83910 1.73 85386 59 1437 85792 1.65 87229 60 1535 83244 1.81 84779 61 1409 83036 1.67 84445 62 1508 83886 1.77 85394 63 1488 83385 1.75 84873 64 1346 78970 1.68 80316 65 1395 79813 1.72 81208 66 1350 76194 1.74 77544 67 1437 79877 1.77 81314 68 1271 77794 1.61 79065 69 1385 77340 1.76 78725 70 1234 76931 1.58 78165 71 1326 77632 1.68 78958 72 1190 72975 1.60 74165 73 1269 71526 1.74 72795 74 1237 72679 1.67 73916 75 1178 70378 1.65 71556 76 1126 68119 1.63 69245 77 1189 71359 1.64 72548 78 1101 66521 1.63 67622 79 1165 67153 1.71 68318 80 1150 65783 1.72 66933 81 1132 63619 1.75 64751 82 1094 62603 1.72 63697 83 1108 63495 1.72 64603 84 1042 61786 1.66 62828 85 1124 66969 1.65 68093 86 1013 61336 1.62 62349 87 1081 60815 1.75 61896 88 950 58012 1.61 58962 89 1061 60460 1.72 61521 90 1129 59691 1.86 60820 91 1103 61740 1.76 62843 92 1001 58852 1.67 59853 93 927 56416 1.62 57343 94 982 55315 1.74 56297 95 1050 56939 1.81 57989 96 934 54515 1.68 55449 97 886 53529 1.63 54415 98 765 52050 1.45 52815 99 576 0 100.00 576 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47668 204102 18.93 251770 2 38800 168663 18.70 207463 3 39149 168269 18.87 207418 4 38096 162699 18.97 200795 5 9741 318481 2.97 328222 6 9872 434126 2.22 443998 7 11867 591214 1.97 603081 8 12261 581983 2.06 594244 9 12228 548871 2.18 561099 10 12276 562579 2.14 574855 11 12070 550407 2.15 562477 12 11693 514730 2.22 526423 13 11637 528668 2.15 540305 14 11826 529852 2.18 541678 15 11679 537869 2.13 549548 16 11141 515879 2.11 527020 17 11476 513015 2.19 524491 18 11276 513956 2.15 525232 19 10540 478328 2.16 488868 20 11075 500709 2.16 511784 21 10861 477055 2.23 487916 22 10574 460319 2.25 470893 23 10369 450637 2.25 461006 24 9850 435043 2.21 444893 25 10069 432901 2.27 442970 26 9928 429355 2.26 439283 27 10435 456912 2.23 467347 28 9788 437133 2.19 446921 29 9722 426429 2.23 436151 30 9752 416332 2.29 426084 31 9323 409814 2.22 419137 32 9143 396401 2.25 405544 33 9188 392755 2.29 401943 34 9359 388247 2.35 397606 35 9754 400155 2.38 409909 36 9019 391949 2.25 400968 37 9103 391559 2.27 400662 38 9620 405665 2.32 415285 39 9049 375662 2.35 384711 40 8972 391892 2.24 400864 41 8886 370738 2.34 379624 42 8801 377010 2.28 385811 43 8524 360692 2.31 369216 44 8654 358216 2.36 366870 45 8431 358129 2.30 366560 46 8251 361369 2.23 369620 47 8259 352147 2.29 360406 48 8350 344687 2.37 353037 49 7925 348947 2.22 356872 50 8051 343940 2.29 351991 51 7867 336716 2.28 344583 52 7424 323505 2.24 330929 53 7348 320301 2.24 327649 54 7253 314603 2.25 321856 55 7517 321838 2.28 329355 56 7136 312702 2.23 319838 57 7148 320108 2.18 327256 58 6961 310562 2.19 317523 59 6995 298900 2.29 305895 60 7079 307426 2.25 314505 61 6782 293809 2.26 300591 62 6665 291940 2.23 298605 63 6842 292800 2.28 299642 64 6540 284068 2.25 290608 65 6445 286303 2.20 292748 66 6510 275984 2.30 282494 67 6262 276128 2.22 282390 68 6557 283652 2.26 290209 69 6389 276257 2.26 282646 70 6205 266603 2.27 272808 71 6159 264068 2.28 270227 72 5958 260764 2.23 266722 73 6104 259266 2.30 265370 74 5807 259611 2.19 265418 75 5837 256916 2.22 262753 76 5648 247548 2.23 253196 77 5731 246081 2.28 251812 78 5743 246202 2.28 251945 79 5537 249425 2.17 254962 80 5585 240449 2.27 246034 81 5672 241440 2.30 247112 82 5520 237301 2.27 242821 83 5477 235223 2.28 240700 84 5396 232280 2.27 237676 85 5241 228687 2.24 233928 86 5316 227653 2.28 232969 87 5133 224736 2.23 229869 88 5026 219004 2.24 224030 89 4953 217360 2.23 222313 90 5082 215646 2.30 220728 91 5072 214369 2.31 219441 92 4707 211904 2.17 216611 93 4773 209215 2.23 213988 94 4719 208015 2.22 212734 95 4664 204305 2.23 208969 96 4345 199856 2.13 204201 97 4176 199048 2.05 203224 98 3658 190048 1.89 193706 99 2615 0 100.00 2615