CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 98670 154147 39.03 252817 2 91006 168053 35.13 259059 3 88710 149245 37.28 237955 4 95705 127255 42.92 222960 5 93301 112645 45.30 205946 6 92601 94091 49.60 186692 7 103026 94087 52.27 197113 8 51382 104377 32.99 155759 9 45658 98430 31.69 144088 10 45857 96527 32.21 142384 11 48038 98737 32.73 146775 12 46213 99086 31.81 145299 13 45510 101432 30.97 146942 14 43428 101091 30.05 144519 15 42942 102780 29.47 145722 16 39590 101349 28.09 140939 17 38393 99220 27.90 137613 18 38822 101151 27.74 139973 19 38187 101505 27.34 139692 20 38783 103285 27.30 142068 21 38859 103489 27.30 142348 22 38113 102387 27.13 140500 23 37711 100673 27.25 138384 24 37551 101752 26.96 139303 25 37286 100733 27.02 138019 26 37165 99824 27.13 136989 27 37136 101321 26.82 138457 28 37647 100632 27.23 138279 29 36302 101811 26.28 138113 30 36185 101344 26.31 137529 31 36768 99668 26.95 136436 32 35761 98011 26.73 133772 33 36390 98509 26.98 134899 34 37143 97472 27.59 134615 35 36179 97783 27.01 133962 36 36166 99281 26.70 135447 37 35137 96633 26.67 131770 38 34471 95546 26.51 130017 39 35553 97459 26.73 133012 40 34896 95824 26.70 130720 41 35195 95980 26.83 131175 42 35813 97736 26.82 133549 43 35368 95858 26.95 131226 44 34740 94974 26.78 129714 45 35286 94116 27.27 129402 46 35472 95400 27.10 130872 47 34950 93435 27.22 128385 48 34652 93601 27.02 128253 49 35628 94012 27.48 129640 50 34387 94275 26.73 128662 51 34939 94243 27.05 129182 52 34945 95841 26.72 130786 53 34128 91386 27.19 125514 54 33126 90614 26.77 123740 55 33054 88225 27.25 121279 56 32495 87500 27.08 119995 57 32675 88748 26.91 121423 58 32656 87482 27.18 120138 59 32965 86649 27.56 119614 60 31909 86888 26.86 118797 61 32084 84829 27.44 116913 62 31505 84991 27.04 116496 63 30782 84278 26.75 115060 64 30527 83951 26.67 114478 65 30488 82902 26.89 113390 66 31140 83391 27.19 114531 67 30587 81521 27.28 112108 68 29540 80736 26.79 110276 69 29502 79661 27.03 109163 70 29317 78588 27.17 107905 71 28396 77709 26.76 106105 72 28360 77050 26.90 105410 73 28076 76158 26.94 104234 74 27553 75062 26.85 102615 75 26901 74032 26.65 100933 76 26506 73161 26.59 99667 77 26682 72006 27.04 98688 78 26623 72464 26.87 99087 79 26252 71565 26.84 97817 80 25723 70727 26.67 96450 81 25210 70717 26.28 95927 82 24695 68455 26.51 93150 83 25097 69357 26.57 94454 84 24531 68605 26.34 93136 85 24371 67625 26.49 91996 86 23757 66015 26.46 89772 87 23152 65448 26.13 88600 88 23119 65007 26.23 88126 89 22807 63874 26.31 86681 90 22502 63723 26.10 86225 91 22278 62503 26.28 84781 92 21793 62185 25.95 83978 93 21604 62116 25.81 83720 94 21577 61300 26.03 82877 95 21399 60646 26.08 82045 96 21276 60467 26.03 81743 97 20639 57858 26.29 78497 98 19315 54581 26.14 73896 99 15314 42478 26.50 57792 100 19780 54220 26.73 74000 101 18420 53875 25.48 72295 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 117863 214564 35.46 332427 2 68349 198869 25.58 267218 3 33187 191829 14.75 225016 4 19346 197663 8.91 217009 5 12084 179179 6.32 191263 6 10862 170622 5.99 181484 7 6834 206960 3.20 213794 8 3220 224680 1.41 227900 9 2773 213706 1.28 216479 10 2754 207047 1.31 209801 11 2987 206803 1.42 209790 12 2694 208607 1.27 211301 13 2450 203102 1.19 205552 14 2360 204517 1.14 206877 15 2369 206723 1.13 209092 16 2012 207298 0.96 209310 17 2029 203706 0.99 205735 18 1984 203719 0.96 205703 19 1942 202208 0.95 204150 20 2098 211812 0.98 213910 21 1989 213200 0.92 215189 22 2105 211265 0.99 213370 23 2076 213997 0.96 216073 24 2158 215907 0.99 218065 25 2122 210268 1.00 212390 26 2351 211831 1.10 214182 27 2110 213867 0.98 215977 28 2015 212512 0.94 214527 29 2224 213374 1.03 215598 30 2118 216496 0.97 218614 31 2036 211652 0.95 213688 32 2188 214384 1.01 216572 33 2208 213724 1.02 215932 34 2123 211209 1.00 213332 35 2332 211185 1.09 213517 36 2196 213114 1.02 215310 37 2349 206687 1.12 209036 38 2356 209872 1.11 212228 39 2123 208876 1.01 210999 40 2105 207745 1.00 209850 41 2231 206147 1.07 208378 42 2230 207815 1.06 210045 43 2173 204031 1.05 206204 44 2272 205002 1.10 207274 45 2283 204975 1.10 207258 46 2314 203097 1.13 205411 47 2455 202682 1.20 205137 48 2372 206269 1.14 208641 49 2396 200628 1.18 203024 50 2446 199865 1.21 202311 51 2408 201080 1.18 203488 52 2469 200469 1.22 202938 53 2470 197163 1.24 199633 54 2558 198503 1.27 201061 55 2469 195127 1.25 197596 56 2527 195684 1.27 198211 57 2497 193728 1.27 196225 58 2423 192004 1.25 194427 59 2417 190911 1.25 193328 60 2598 190862 1.34 193460 61 2587 188499 1.35 191086 62 2581 187613 1.36 190194 63 2538 185593 1.35 188131 64 2580 185012 1.38 187592 65 2764 182872 1.49 185636 66 2525 180145 1.38 182670 67 2510 175142 1.41 177652 68 2697 175759 1.51 178456 69 2431 174691 1.37 177122 70 2368 169904 1.37 172272 71 2325 169207 1.36 171532 72 2424 168439 1.42 170863 73 2309 166206 1.37 168515 74 2427 163703 1.46 166130 75 2276 164119 1.37 166395 76 2271 158849 1.41 161120 77 2465 158741 1.53 161206 78 2274 156852 1.43 159126 79 2275 152885 1.47 155160 80 2259 152471 1.46 154730 81 2218 150138 1.46 152356 82 2181 148091 1.45 150272 83 2220 149214 1.47 151434 84 2203 148302 1.46 150505 85 2332 145534 1.58 147866 86 2304 144855 1.57 147159 87 2182 145449 1.48 147631 88 2339 141972 1.62 144311 89 2124 140538 1.49 142662 90 2163 139759 1.52 141922 91 2101 136361 1.52 138462 92 2181 138218 1.55 140399 93 2258 135413 1.64 137671 94 2154 132532 1.60 134686 95 2137 130579 1.61 132716 96 2111 129651 1.60 131762 97 2018 117751 1.68 119769 98 1771 108193 1.61 109964 99 1083 69740 1.53 70823 100 1330 71354 1.83 72684 101 3086 117801 2.55 120887 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 150039 302172 33.18 452211 2 79006 316966 19.95 395972 3 42998 351965 10.89 394963 4 36503 381851 8.73 418354 5 34349 440067 7.24 474416 6 27200 474890 5.42 502090 7 21812 591602 3.56 613414 8 15044 632025 2.32 647069 9 11175 591485 1.85 602660 10 11058 579083 1.87 590141 11 13629 581182 2.29 594811 12 11156 590931 1.85 602087 13 12145 602287 1.98 614432 14 13630 616119 2.16 629749 15 11333 628926 1.77 640259 16 11296 634008 1.75 645304 17 13436 638763 2.06 652199 18 11185 658937 1.67 670122 19 11388 670094 1.67 681482 20 13398 691685 1.90 705083 21 11292 691046 1.61 702338 22 11932 692771 1.69 704703 23 13687 695477 1.93 709164 24 11367 698360 1.60 709727 25 12114 698647 1.70 710761 26 13833 703712 1.93 717545 27 11661 706437 1.62 718098 28 11484 707544 1.60 719028 29 13580 707185 1.88 720765 30 11396 702437 1.60 713833 31 11851 693970 1.68 705821 32 13076 694660 1.85 707736 33 11376 692012 1.62 703388 34 12331 694677 1.74 707008 35 13464 686413 1.92 699877 36 11464 691719 1.63 703183 37 11551 686208 1.66 697759 38 13094 688821 1.87 701915 39 10857 683592 1.56 694449 40 11191 679091 1.62 690282 41 12885 681636 1.86 694521 42 11314 684295 1.63 695609 43 11941 673711 1.74 685652 44 12754 677631 1.85 690385 45 11133 668823 1.64 679956 46 11226 667421 1.65 678647 47 12758 662574 1.89 675332 48 10592 660470 1.58 671062 49 10995 652285 1.66 663280 50 12208 648550 1.85 660758 51 10262 641097 1.58 651359 52 11236 636258 1.74 647494 53 12335 630152 1.92 642487 54 10691 627611 1.67 638302 55 11107 623773 1.75 634880 56 12255 619812 1.94 632067 57 10298 623317 1.63 633615 58 10785 619414 1.71 630199 59 12288 618387 1.95 630675 60 9942 610008 1.60 619950 61 10790 603173 1.76 613963 62 11630 593481 1.92 605111 63 10060 589178 1.68 599238 64 10795 583256 1.82 594051 65 11643 578642 1.97 590285 66 9764 573319 1.67 583083 67 10101 568676 1.75 578777 68 11122 564535 1.93 575657 69 9409 559696 1.65 569105 70 9697 553990 1.72 563687 71 10865 549818 1.94 560683 72 9289 546754 1.67 556043 73 10170 534839 1.87 545009 74 10533 532920 1.94 543453 75 9058 527372 1.69 536430 76 9278 524284 1.74 533562 77 10420 518377 1.97 528797 78 8626 513937 1.65 522563 79 8944 509138 1.73 518082 80 9964 502738 1.94 512702 81 8658 496730 1.71 505388 82 9255 490392 1.85 499647 83 10050 487362 2.02 497412 84 8602 480669 1.76 489271 85 9028 472254 1.88 481282 86 9478 466498 1.99 475976 87 8284 463530 1.76 471814 88 8786 458282 1.88 467068 89 9420 452838 2.04 462258 90 7924 448203 1.74 456127 91 8202 442730 1.82 450932 92 8647 440310 1.93 448957 93 7625 434668 1.72 442293 94 7893 427413 1.81 435306 95 8871 422233 2.06 431104 96 7474 412309 1.78 419783 97 7457 399423 1.83 406880 98 7823 372272 2.06 380095 99 4708 257070 1.80 261778 100 5051 227299 2.17 232350 101 7832 374637 2.05 382469 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 65016 74465 46.61 139481 2 55968 64370 46.51 120338 3 62076 72741 46.04 134817 4 57141 82695 40.86 139836 5 25246 107006 19.09 132252 6 15169 57150 20.98 72319 7 13408 60388 18.17 73796 8 14019 55365 20.20 69384 9 12418 49296 20.12 61714 10 13429 53920 19.94 67349 11 14842 52297 22.11 67139 12 14159 49639 22.19 63798 13 14560 48978 22.92 63538 14 15281 49333 23.65 64614 15 14589 45305 24.36 59894 16 14009 44080 24.12 58089 17 16631 47331 26.00 63962 18 15650 45987 25.39 61637 19 15108 44313 25.43 59421 20 14000 43432 24.38 57432 21 14884 41673 26.32 56557 22 14846 42421 25.92 57267 23 13784 41046 25.14 54830 24 12897 38409 25.14 51306 25 14425 41314 25.88 55739 26 13027 38685 25.19 51712 27 14168 38984 26.66 53152 28 13213 37414 26.10 50627 29 13280 38491 25.65 51771 30 12980 35977 26.51 48957 31 12593 36329 25.74 48922 32 11906 33965 25.96 45871 33 13264 35122 27.41 48386 34 12451 35982 25.71 48433 35 14791 37863 28.09 52654 36 12694 34841 26.70 47535 37 12940 34487 27.28 47427 38 11857 34101 25.80 45958 39 12123 33176 26.76 45299 40 13019 33216 28.16 46235 41 11715 32676 26.39 44391 42 11637 32803 26.19 44440 43 11633 32128 26.58 43761 44 10987 31364 25.94 42351 45 13079 33932 27.82 47011 46 10689 28837 27.04 39526 47 10709 29844 26.41 40553 48 10775 29583 26.70 40358 49 10538 29813 26.12 40351 50 10000 28019 26.30 38019 51 9924 27428 26.57 37352 52 9916 27806 26.29 37722 53 10152 27220 27.16 37372 54 9897 26695 27.05 36592 55 10033 27259 26.90 37292 56 9262 26009 26.26 35271 57 9583 26557 26.52 36140 58 9290 25846 26.44 35136 59 9323 24667 27.43 33990 60 9352 25012 27.21 34364 61 8420 23849 26.09 32269 62 8400 23937 25.98 32337 63 9139 23692 27.84 32831 64 8393 23288 26.49 31681 65 8295 22379 27.04 30674 66 8642 22902 27.40 31544 67 8105 23096 25.98 31201 68 8615 23290 27.00 31905 69 7805 21306 26.81 29111 70 7664 21332 26.43 28996 71 7814 20427 27.67 28241 72 7308 20211 26.56 27519 73 7607 21112 26.49 28719 74 6797 19335 26.01 26132 75 6804 19443 25.92 26247 76 6932 18932 26.80 25864 77 6854 19058 26.45 25912 78 6807 19292 26.08 26099 79 6523 18666 25.90 25189 80 6419 17948 26.34 24367 81 6399 17981 26.25 24380 82 6286 18172 25.70 24458 83 6368 17547 26.63 23915 84 7055 18372 27.75 25427 85 6056 17406 25.81 23462 86 6057 17155 26.09 23212 87 5983 16515 26.59 22498 88 5919 16412 26.51 22331 89 6202 16750 27.02 22952 90 5895 16587 26.22 22482 91 5880 16243 26.58 22123 92 5602 15886 26.07 21488 93 5533 15649 26.12 21182 94 5682 15619 26.67 21301 95 5508 15445 26.29 20953 96 5534 15364 26.48 20898 97 5834 15773 27.00 21607 98 5357 14232 27.35 19589 99 4664 0 100.00 4664 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19846 100013 16.56 119859 2 20679 103855 16.61 124534 3 19000 103709 15.48 122709 4 20234 107556 15.83 127790 5 1965 196741 0.99 198706 6 1503 240912 0.62 242415 7 949 129442 0.73 130391 8 939 138025 0.68 138964 9 858 116604 0.73 117462 10 855 111662 0.76 112517 11 1123 145053 0.77 146176 12 920 117062 0.78 117982 13 860 114938 0.74 115798 14 887 112127 0.78 113014 15 871 106502 0.81 107373 16 756 99331 0.76 100087 17 896 104942 0.85 105838 18 920 94692 0.96 95612 19 848 92481 0.91 93329 20 777 91412 0.84 92189 21 975 87950 1.10 88925 22 746 93669 0.79 94415 23 874 92335 0.94 93209 24 629 84531 0.74 85160 25 693 84882 0.81 85575 26 732 88776 0.82 89508 27 730 83704 0.86 84434 28 644 79307 0.81 79951 29 677 83753 0.80 84430 30 679 81307 0.83 81986 31 638 76999 0.82 77637 32 656 79076 0.82 79732 33 728 89370 0.81 90098 34 621 76503 0.81 77124 35 669 78926 0.84 79595 36 660 79007 0.83 79667 37 612 72842 0.83 73454 38 632 75122 0.83 75754 39 609 71421 0.85 72030 40 604 69655 0.86 70259 41 605 68357 0.88 68962 42 523 65247 0.80 65770 43 540 66231 0.81 66771 44 576 66598 0.86 67174 45 561 62850 0.88 63411 46 544 62568 0.86 63112 47 545 64182 0.84 64727 48 567 61564 0.91 62131 49 563 63573 0.88 64136 50 545 61486 0.88 62031 51 485 58286 0.83 58771 52 507 56776 0.89 57283 53 557 63021 0.88 63578 54 494 58655 0.84 59149 55 505 56788 0.88 57293 56 498 57524 0.86 58022 57 535 54379 0.97 54914 58 436 53896 0.80 54332 59 490 54570 0.89 55060 60 560 52965 1.05 53525 61 465 52908 0.87 53373 62 499 53633 0.92 54132 63 488 53307 0.91 53795 64 418 49926 0.83 50344 65 490 50873 0.95 51363 66 371 48059 0.77 48430 67 465 50690 0.91 51155 68 409 49332 0.82 49741 69 424 49352 0.85 49776 70 405 48322 0.83 48727 71 424 48758 0.86 49182 72 396 45761 0.86 46157 73 371 45056 0.82 45427 74 387 46377 0.83 46764 75 382 44510 0.85 44892 76 360 42635 0.84 42995 77 383 44671 0.85 45054 78 352 41571 0.84 41923 79 373 41713 0.89 42086 80 361 41259 0.87 41620 81 329 39691 0.82 40020 82 354 39217 0.89 39571 83 356 39396 0.90 39752 84 331 38256 0.86 38587 85 326 41353 0.78 41679 86 320 37905 0.84 38225 87 300 37557 0.79 37857 88 305 35996 0.84 36301 89 329 37618 0.87 37947 90 347 37191 0.92 37538 91 324 37799 0.85 38123 92 312 36091 0.86 36403 93 293 35019 0.83 35312 94 303 34116 0.88 34419 95 328 35105 0.93 35433 96 267 33469 0.79 33736 97 317 32823 0.96 33140 98 240 32284 0.74 32524 99 197 0 100.00 197 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29877 145353 17.05 175230 2 23804 119865 16.57 143669 3 24326 118819 16.99 143145 4 23528 112076 17.35 135604 5 4826 220963 2.14 225789 6 4216 298141 1.39 302357 7 5004 404988 1.22 409992 8 5110 397816 1.27 402926 9 5273 373244 1.39 378517 10 5174 383314 1.33 388488 11 5011 374993 1.32 380004 12 4914 348062 1.39 352976 13 4938 359613 1.35 364551 14 4723 359028 1.30 363751 15 4757 363162 1.29 367919 16 4640 347899 1.32 352539 17 4634 345688 1.32 350322 18 4489 342434 1.29 346923 19 4323 322371 1.32 326694 20 4540 336992 1.33 341532 21 4319 320300 1.33 324619 22 4333 308717 1.38 313050 23 4256 303788 1.38 308044 24 3928 290766 1.33 294694 25 4235 290237 1.44 294472 26 4072 287659 1.40 291731 27 4237 305410 1.37 309647 28 3934 290516 1.34 294450 29 3999 282786 1.39 286785 30 3946 277385 1.40 281331 31 3712 272524 1.34 276236 32 3702 265988 1.37 269690 33 3660 261407 1.38 265067 34 3940 258854 1.50 262794 35 3907 265571 1.45 269478 36 3543 260964 1.34 264507 37 3624 259353 1.38 262977 38 3804 269574 1.39 273378 39 3472 249634 1.37 253106 40 3543 258639 1.35 262182 41 3554 245493 1.43 249047 42 3424 248746 1.36 252170 43 3450 237782 1.43 241232 44 3320 235417 1.39 238737 45 3304 236282 1.38 239586 46 3309 238091 1.37 241400 47 3189 231500 1.36 234689 48 3196 227619 1.38 230815 49 3164 229419 1.36 232583 50 3182 224656 1.40 227838 51 2978 220603 1.33 223581 52 3038 211177 1.42 214215 53 2897 209631 1.36 212528 54 2778 204838 1.34 207616 55 2945 209707 1.38 212652 56 2663 203052 1.29 205715 57 2675 208224 1.27 210899 58 2801 200487 1.38 203288 59 2716 195337 1.37 198053 60 2648 201086 1.30 203734 61 2691 190976 1.39 193667 62 2488 189714 1.29 192202 63 2552 189189 1.33 191741 64 2601 183890 1.39 186491 65 2496 184754 1.33 187250 66 2403 178259 1.33 180662 67 2387 177470 1.33 179857 68 2428 183251 1.31 185679 69 2422 176839 1.35 179261 70 2313 171624 1.33 173937 71 2332 170458 1.35 172790 72 2297 167335 1.35 169632 73 2319 167027 1.37 169346 74 2265 166148 1.34 168413 75 2196 164756 1.32 166952 76 2119 159296 1.31 161415 77 2242 156925 1.41 159167 78 2056 157009 1.29 159065 79 2155 158439 1.34 160594 80 2135 153183 1.37 155318 81 2095 153383 1.35 155478 82 2046 151133 1.34 153179 83 2025 149276 1.34 151301 84 2076 147844 1.38 149920 85 2114 145860 1.43 147974 86 1914 145624 1.30 147538 87 1881 143067 1.30 144948 88 1824 139544 1.29 141368 89 1846 138416 1.32 140262 90 1810 136513 1.31 138323 91 1858 136415 1.34 138273 92 1867 134435 1.37 136302 93 1720 132847 1.28 134567 94 1737 131503 1.30 133240 95 1750 129202 1.34 130952 96 1652 125966 1.29 127618 97 1534 126234 1.20 127768 98 1343 119768 1.11 121111 99 1003 0 100.00 1003