CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 107821 149311 41.93 257132 2 100916 163530 38.16 264446 3 100965 149066 40.38 250031 4 107902 130324 45.29 238226 5 104771 114172 47.85 218943 6 103219 95859 51.85 199078 7 113985 94602 54.65 208587 8 56857 106914 34.72 163771 9 51267 99539 34.00 150806 10 51490 98388 34.35 149878 11 53729 101041 34.72 154770 12 51830 101652 33.77 153482 13 51346 103690 33.12 155036 14 49301 103936 32.17 153237 15 48566 105830 31.46 154396 16 45563 105226 30.22 150789 17 43840 102202 30.02 146042 18 43986 103937 29.74 147923 19 43595 104589 29.42 148184 20 44118 106474 29.30 150592 21 43978 105996 29.32 149974 22 43451 104320 29.40 147771 23 43320 104275 29.35 147595 24 42300 105261 28.67 147561 25 41880 104048 28.70 145928 26 42061 103114 28.97 145175 27 41500 105055 28.32 146555 28 42453 105690 28.66 148143 29 41653 104935 28.42 146588 30 41258 105161 28.18 146419 31 42234 103910 28.90 146144 32 40974 102371 28.58 143345 33 41423 102588 28.76 144011 34 42306 103032 29.11 145338 35 41771 102519 28.95 144290 36 41287 103369 28.54 144656 37 40308 100748 28.58 141056 38 39697 100699 28.28 140396 39 40989 102068 28.65 143057 40 40037 101649 28.26 141686 41 40000 101177 28.33 141177 42 40742 103258 28.29 144000 43 40309 101173 28.49 141482 44 40182 101323 28.40 141505 45 40615 100084 28.87 140699 46 41099 101541 28.81 142640 47 40100 99483 28.73 139583 48 39726 99774 28.48 139500 49 41379 99614 29.35 140993 50 39770 100487 28.36 140257 51 39938 100097 28.52 140035 52 40375 101787 28.40 142162 53 39278 98163 28.58 137441 54 38695 96914 28.53 135609 55 38665 95804 28.75 134469 56 38132 94825 28.68 132957 57 38631 96335 28.62 134966 58 38112 95796 28.46 133908 59 38496 94860 28.87 133356 60 37569 94392 28.47 131961 61 38607 93751 29.17 132358 62 37329 93288 28.58 130617 63 36763 92799 28.37 129562 64 36462 92385 28.30 128847 65 36881 91964 28.62 128845 66 37183 91273 28.95 128456 67 36696 90590 28.83 127286 68 36292 90035 28.73 126327 69 36350 89535 28.88 125885 70 35512 89329 28.45 124841 71 35142 87142 28.74 122284 72 34555 87227 28.37 121782 73 34242 86397 28.38 120639 74 34246 85739 28.54 119985 75 33050 85222 27.94 118272 76 33093 84584 28.12 117677 77 33470 83246 28.68 116716 78 33399 84133 28.42 117532 79 32877 82289 28.55 115166 80 32315 82183 28.22 114498 81 32014 81244 28.27 113258 82 31214 80393 27.97 111607 83 31830 80643 28.30 112473 84 31301 79436 28.27 110737 85 31218 78565 28.44 109783 86 30342 77391 28.16 107733 87 29506 76429 27.85 105935 88 29780 76485 28.02 106265 89 29156 75441 27.87 104597 90 29031 75268 27.83 104299 91 28582 73922 27.88 102504 92 28034 74039 27.46 102073 93 28102 73510 27.66 101612 94 28020 72516 27.87 100536 95 27354 71543 27.66 98897 96 27285 71660 27.58 98945 97 26103 69382 27.34 95485 98 25248 65393 27.85 90641 99 19421 50729 27.68 70150 100 25589 64936 28.27 90525 101 23302 63835 26.74 87137 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 121251 226506 34.87 347757 2 70144 215877 24.52 286021 3 33274 209051 13.73 242325 4 19111 211602 8.28 230713 5 12272 188767 6.10 201039 6 11025 180929 5.74 191954 7 7714 220897 3.37 228611 8 3730 236655 1.55 240385 9 3005 226281 1.31 229286 10 3054 221203 1.36 224257 11 3169 223078 1.40 226247 12 3166 221958 1.41 225124 13 2889 216694 1.32 219583 14 2612 215921 1.20 218533 15 2568 220300 1.15 222868 16 2382 220189 1.07 222571 17 2247 217219 1.02 219466 18 2250 216849 1.03 219099 19 2121 216727 0.97 218848 20 2282 225736 1.00 228018 21 2226 228216 0.97 230442 22 2336 225010 1.03 227346 23 2379 229129 1.03 231508 24 2268 230805 0.97 233073 25 2252 225066 0.99 227318 26 2441 225390 1.07 227831 27 2238 229778 0.96 232016 28 2177 227369 0.95 229546 29 2313 229529 1.00 231842 30 2168 232502 0.92 234670 31 2174 226169 0.95 228343 32 2277 229643 0.98 231920 33 2281 231668 0.97 233949 34 2233 227360 0.97 229593 35 2419 227639 1.05 230058 36 2222 228441 0.96 230663 37 2356 222907 1.05 225263 38 2342 226566 1.02 228908 39 2217 225515 0.97 227732 40 2307 224482 1.02 226789 41 2273 223537 1.01 225810 42 2356 224803 1.04 227159 43 2263 221992 1.01 224255 44 2348 224402 1.04 226750 45 2325 223957 1.03 226282 46 2321 222058 1.03 224379 47 2522 222016 1.12 224538 48 2393 225722 1.05 228115 49 2346 220138 1.05 222484 50 2526 218421 1.14 220947 51 2418 222020 1.08 224438 52 2508 220543 1.12 223051 53 2532 217523 1.15 220055 54 2563 220099 1.15 222662 55 2543 216574 1.16 219117 56 2642 217109 1.20 219751 57 2497 216474 1.14 218971 58 2578 214825 1.19 217403 59 2587 214232 1.19 216819 60 2546 214958 1.17 217504 61 2549 211962 1.19 214511 62 2684 211836 1.25 214520 63 2602 210275 1.22 212877 64 2716 208994 1.28 211710 65 2871 208427 1.36 211298 66 2650 205633 1.27 208283 67 2546 200697 1.25 203243 68 2816 202312 1.37 205128 69 2684 201350 1.32 204034 70 2587 196202 1.30 198789 71 2576 195265 1.30 197841 72 2557 196390 1.29 198947 73 2533 193283 1.29 195816 74 2690 191428 1.39 194118 75 2488 191775 1.28 194263 76 2398 186068 1.27 188466 77 2638 186163 1.40 188801 78 2499 184573 1.34 187072 79 2472 181783 1.34 184255 80 2503 179873 1.37 182376 81 2455 178791 1.35 181246 82 2443 174845 1.38 177288 83 2519 177516 1.40 180035 84 2566 176447 1.43 179013 85 2705 174408 1.53 177113 86 2490 173109 1.42 175599 87 2338 174007 1.33 176345 88 2581 169716 1.50 172297 89 2481 168624 1.45 171105 90 2489 167726 1.46 170215 91 2443 166358 1.45 168801 92 2669 166077 1.58 168746 93 2524 163625 1.52 166149 94 2484 159981 1.53 162465 95 2433 158259 1.51 160692 96 2439 156814 1.53 159253 97 2256 144346 1.54 146602 98 2115 130408 1.60 132523 99 1411 85767 1.62 87178 100 1544 86734 1.75 88278 101 3267 142311 2.24 145578 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 166943 332300 33.44 499243 2 85199 355121 19.35 440320 3 45090 390207 10.36 435297 4 37892 422181 8.24 460073 5 34940 480064 6.78 515004 6 27999 518364 5.12 546363 7 22807 642142 3.43 664949 8 14729 684678 2.11 699407 9 11250 638651 1.73 649901 10 10825 624297 1.70 635122 11 12897 625778 2.02 638675 12 10848 629063 1.70 639911 13 11968 639221 1.84 651189 14 12975 653275 1.95 666250 15 11146 666987 1.64 678133 16 10705 672930 1.57 683635 17 12429 679272 1.80 691701 18 10678 701336 1.50 712014 19 10742 712780 1.48 723522 20 12365 734045 1.66 746410 21 10702 734216 1.44 744918 22 11140 736191 1.49 747331 23 12844 737424 1.71 750268 24 10864 740161 1.45 751025 25 11410 743037 1.51 754447 26 13002 749149 1.71 762151 27 10981 751064 1.44 762045 28 10800 755040 1.41 765840 29 12682 753903 1.65 766585 30 10783 747808 1.42 758591 31 11305 740676 1.50 751981 32 12225 743454 1.62 755679 33 10819 742671 1.44 753490 34 11861 745315 1.57 757176 35 12761 737588 1.70 750349 36 10977 746052 1.45 757029 37 11190 736629 1.50 747819 38 12351 741104 1.64 753455 39 10607 734832 1.42 745439 40 11037 733220 1.48 744257 41 12417 735531 1.66 747948 42 10908 737787 1.46 748695 43 11634 731485 1.57 743119 44 12222 735543 1.63 747765 45 11000 727685 1.49 738685 46 11118 727785 1.50 738903 47 12160 723349 1.65 735509 48 10588 722184 1.44 732772 49 10750 717989 1.48 728739 50 11788 713987 1.62 725775 51 10276 707226 1.43 717502 52 11037 704304 1.54 715341 53 12115 697310 1.71 709425 54 10684 696598 1.51 707282 55 10975 691060 1.56 702035 56 11991 689768 1.71 701759 57 10208 695159 1.45 705367 58 10633 691428 1.51 702061 59 12051 693350 1.71 705401 60 10060 684888 1.45 694948 61 10768 679297 1.56 690065 62 11586 670318 1.70 681904 63 10217 667666 1.51 677883 64 10944 661833 1.63 672777 65 11632 660262 1.73 671894 66 10051 654079 1.51 664130 67 10227 649763 1.55 659990 68 11177 645445 1.70 656622 69 9741 642464 1.49 652205 70 10039 636532 1.55 646571 71 11107 632628 1.73 643735 72 9927 630595 1.55 640522 73 10584 619908 1.68 630492 74 10966 618681 1.74 629647 75 9510 615239 1.52 624749 76 9807 612387 1.58 622194 77 10946 604439 1.78 615385 78 9176 599619 1.51 608795 79 9457 595897 1.56 605354 80 10448 590615 1.74 601063 81 9261 581730 1.57 590991 82 9954 577302 1.70 587256 83 10622 576332 1.81 586954 84 9242 568956 1.60 578198 85 9582 559924 1.68 569506 86 10084 553915 1.79 563999 87 8937 550559 1.60 559496 88 9324 543658 1.69 552982 89 9955 537852 1.82 547807 90 8504 535335 1.56 543839 91 9008 528335 1.68 537343 92 9493 524742 1.78 534235 93 8237 520387 1.56 528624 94 8660 513001 1.66 521661 95 9404 505965 1.82 515369 96 8024 496927 1.59 504951 97 7953 482419 1.62 490372 98 8230 449047 1.80 457277 99 5272 310636 1.67 315908 100 5596 276351 1.98 281947 101 8418 452658 1.83 461076 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 91485 95245 48.99 186730 2 77797 79391 49.49 157188 3 84696 89864 48.52 174560 4 76274 100134 43.24 176408 5 34100 129686 20.82 163786 6 20930 70233 22.96 91163 7 18515 73425 20.14 91940 8 19039 67606 21.97 86645 9 16678 58872 22.08 75550 10 18235 64730 21.98 82965 11 19638 63454 23.63 83092 12 18883 59976 23.95 78859 13 18785 58364 24.35 77149 14 19922 60188 24.87 80110 15 19915 55018 26.58 74933 16 18532 52947 25.93 71479 17 22122 57450 27.80 79572 18 21628 56736 27.60 78364 19 20569 54793 27.29 75362 20 18832 52164 26.53 70996 21 19637 50195 28.12 69832 22 19421 51381 27.43 70802 23 18618 49923 27.16 68541 24 17314 47090 26.88 64404 25 19038 50004 27.57 69042 26 17734 47292 27.27 65026 27 18859 48168 28.14 67027 28 17369 45834 27.48 63203 29 18097 47041 27.78 65138 30 17024 44204 27.80 61228 31 16687 44526 27.26 61213 32 15931 42204 27.40 58135 33 18237 43363 29.61 61600 34 16896 45062 27.27 61958 35 20390 48014 29.81 68404 36 17104 42695 28.60 59799 37 17633 43600 28.80 61233 38 15945 41365 27.82 57310 39 16446 41311 28.47 57757 40 17732 41145 30.12 58877 41 15124 40557 27.16 55681 42 15533 41521 27.23 57054 43 15634 40106 28.05 55740 44 14809 39153 27.44 53962 45 18032 43247 29.43 61279 46 14333 36404 28.25 50737 47 14452 36769 28.21 51221 48 14271 36848 27.92 51119 49 13988 37015 27.43 51003 50 13542 35138 27.82 48680 51 13153 34291 27.72 47444 52 13604 34651 28.19 48255 53 13432 33781 28.45 47213 54 13313 34205 28.02 47518 55 13715 34197 28.63 47912 56 12442 32986 27.39 45428 57 13004 33433 28.00 46437 58 12916 32780 28.27 45696 59 12439 31006 28.63 43445 60 12747 31543 28.78 44290 61 11284 30821 26.80 42105 62 11503 29913 27.77 41416 63 12375 29989 29.21 42364 64 11541 29225 28.31 40766 65 11164 27608 28.79 38772 66 11921 29124 29.04 41045 67 11136 29446 27.44 40582 68 12149 30700 28.35 42849 69 10926 26913 28.87 37839 70 10493 26943 28.03 37436 71 10697 26289 28.92 36986 72 10117 25526 28.38 35643 73 10215 26425 27.88 36640 74 9208 25050 26.88 34258 75 9265 25028 27.02 34293 76 9583 24465 28.15 34048 77 9388 24213 27.94 33601 78 9353 23948 28.09 33301 79 9033 23969 27.37 33002 80 8673 23585 26.89 32258 81 8889 23234 27.67 32123 82 8751 23327 27.28 32078 83 8862 22403 28.34 31265 84 9894 24457 28.80 34351 85 8492 22149 27.71 30641 86 8337 21908 27.56 30245 87 8404 21254 28.34 29658 88 8098 21311 27.54 29409 89 8620 21830 28.31 30450 90 8480 21719 28.08 30199 91 8009 20866 27.74 28875 92 7968 20273 28.21 28241 93 7893 19840 28.46 27733 94 7920 20387 27.98 28307 95 8054 19909 28.80 27963 96 7699 19766 28.03 27465 97 8291 21120 28.19 29411 98 7543 18253 29.24 25796 99 6671 0 100.00 6671 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 23836 120495 16.51 144331 2 24392 122876 16.56 147268 3 22022 123032 15.18 145054 4 23504 130608 15.25 154112 5 2548 238857 1.06 241405 6 1914 295687 0.64 297601 7 1180 162001 0.72 163181 8 1204 172124 0.69 173328 9 1086 141895 0.76 142981 10 1100 135590 0.80 136690 11 1523 184523 0.82 186046 12 1126 145953 0.77 147079 13 1191 143201 0.82 144392 14 1129 136672 0.82 137801 15 1109 130827 0.84 131936 16 946 122727 0.76 123673 17 1135 130436 0.86 131571 18 1203 116734 1.02 117937 19 1003 114224 0.87 115227 20 932 112494 0.82 113426 21 1153 108125 1.06 109278 22 1109 117585 0.93 118694 23 1084 117107 0.92 118191 24 882 103825 0.84 104707 25 875 106075 0.82 106950 26 1010 110779 0.90 111789 27 890 103792 0.85 104682 28 883 98896 0.88 99779 29 966 106517 0.90 107483 30 928 102676 0.90 103604 31 877 96816 0.90 97693 32 800 99520 0.80 100320 33 946 117085 0.80 118031 34 789 96518 0.81 97307 35 828 100708 0.82 101536 36 887 100604 0.87 101491 37 735 91887 0.79 92622 38 778 97857 0.79 98635 39 739 89824 0.82 90563 40 788 89149 0.88 89937 41 720 86797 0.82 87517 42 747 82342 0.90 83089 43 744 84662 0.87 85406 44 753 84372 0.88 85125 45 671 79416 0.84 80087 46 699 79233 0.87 79932 47 697 81743 0.85 82440 48 709 78351 0.90 79060 49 735 81287 0.90 82022 50 672 77944 0.85 78616 51 659 74846 0.87 75505 52 658 72230 0.90 72888 53 719 81051 0.88 81770 54 669 74143 0.89 74812 55 681 72311 0.93 72992 56 644 73467 0.87 74111 57 709 69412 1.01 70121 58 649 68080 0.94 68729 59 660 70384 0.93 71044 60 672 69305 0.96 69977 61 575 67622 0.84 68197 62 637 69610 0.91 70247 63 687 68607 0.99 69294 64 583 64099 0.90 64682 65 600 66108 0.90 66708 66 568 61886 0.91 62454 67 568 66719 0.84 67287 68 526 63850 0.82 64376 69 617 63648 0.96 64265 70 571 63189 0.90 63760 71 524 64172 0.81 64696 72 542 59056 0.91 59598 73 509 58261 0.87 58770 74 579 60550 0.95 61129 75 550 57659 0.94 58209 76 507 55675 0.90 56182 77 513 58977 0.86 59490 78 491 54580 0.89 55071 79 474 54411 0.86 54885 80 472 53829 0.87 54301 81 473 51990 0.90 52463 82 419 50764 0.82 51183 83 475 51504 0.91 51979 84 458 50311 0.90 50769 85 458 55160 0.82 55618 86 432 49855 0.86 50287 87 465 49306 0.93 49771 88 434 47378 0.91 47812 89 476 49346 0.96 49822 90 494 49079 1.00 49573 91 429 51074 0.83 51503 92 416 48228 0.86 48644 93 401 45946 0.87 46347 94 425 44713 0.94 45138 95 450 46568 0.96 47018 96 443 43849 1.00 44292 97 394 43463 0.90 43857 98 348 43379 0.80 43727 99 244 0 100.00 244 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32206 162651 16.53 194857 2 26021 132541 16.41 158562 3 26401 133700 16.49 160101 4 25440 129172 16.45 154612 5 5274 261008 1.98 266282 6 4994 353214 1.39 358208 7 5619 486489 1.14 492108 8 5932 478210 1.23 484142 9 5903 449662 1.30 455565 10 5801 460389 1.24 466190 11 5869 451351 1.28 457220 12 5601 422688 1.31 428289 13 5547 436515 1.25 442062 14 5444 436853 1.23 442297 15 5560 448110 1.23 453670 16 5216 429770 1.20 434986 17 5343 425386 1.24 430729 18 5310 424081 1.24 429391 19 4892 393186 1.23 398078 20 5165 417155 1.22 422320 21 4953 394512 1.24 399465 22 5022 378360 1.31 383382 23 4883 372857 1.29 377740 24 4623 359375 1.27 363998 25 4816 357532 1.33 362348 26 4758 354713 1.32 359471 27 5024 381772 1.30 386796 28 4567 360793 1.25 365360 29 4448 352094 1.25 356542 30 4489 342326 1.29 346815 31 4407 337715 1.29 342122 32 4279 327177 1.29 331456 33 4294 323719 1.31 328013 34 4233 321700 1.30 325933 35 4818 332080 1.43 336898 36 4166 326238 1.26 330404 37 4045 323695 1.23 327740 38 4550 339974 1.32 344524 39 4080 309534 1.30 313614 40 4028 325789 1.22 329817 41 4065 306200 1.31 310265 42 3992 314619 1.25 318611 43 4050 296875 1.35 300925 44 3854 292566 1.30 296420 45 3938 295238 1.32 299176 46 3764 298459 1.25 302223 47 3683 290031 1.25 293714 48 3903 283904 1.36 287807 49 3566 291295 1.21 294861 50 3563 284223 1.24 287786 51 3531 276678 1.26 280209 52 3408 263811 1.28 267219 53 3422 262948 1.28 266370 54 3237 257457 1.24 260694 55 3542 266607 1.31 270149 56 3265 255660 1.26 258925 57 3229 264438 1.21 267667 58 3230 254115 1.26 257345 59 3163 243960 1.28 247123 60 3223 252168 1.26 255391 61 3113 240588 1.28 243701 62 3090 237476 1.28 240566 63 2995 239633 1.23 242628 64 2924 230830 1.25 233754 65 2972 234355 1.25 237327 66 2883 225128 1.26 228011 67 2749 225457 1.20 228206 68 2948 233464 1.25 236412 69 2899 226004 1.27 228903 70 2621 216355 1.20 218976 71 2757 214585 1.27 217342 72 2670 213367 1.24 216037 73 2696 210515 1.26 213211 74 2573 211818 1.20 214391 75 2524 209926 1.19 212450 76 2431 200587 1.20 203018 77 2440 200473 1.20 202913 78 2558 200734 1.26 203292 79 2433 203798 1.18 206231 80 2438 196682 1.22 199120 81 2492 196323 1.25 198815 82 2435 192974 1.25 195409 83 2428 190773 1.26 193201 84 2474 189107 1.29 191581 85 2328 186325 1.23 188653 86 2346 185459 1.25 187805 87 2292 183661 1.23 185953 88 2160 177013 1.21 179173 89 2256 176826 1.26 179082 90 2277 175409 1.28 177686 91 2156 174906 1.22 177062 92 2111 172745 1.21 174856 93 2027 170184 1.18 172211 94 2033 168849 1.19 170882 95 2053 165739 1.22 167792 96 1948 162338 1.19 164286 97 1882 161729 1.15 163611 98 1608 155460 1.02 157068 99 1175 0 100.00 1175