/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
27792315
Paired-end alignments with a unique best hit
12229034
Pairs without alignments under any condition
12912342
Pairs that did not map uniquely
2650939
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
371098859
Methylated C's in CpG context
12526554
Methylated C's in CHG context
1883224
Methylated C's in CHH context
2923602
Methylated C's in Unknown context
54090
Unmethylated C's in CpG context
39735089
Unmethylated C's in CHG context
76137777
Unmethylated C's in CHH context
237892613
Unmethylated C's in Unknown context
810936
Percentage methylation (CpG context)
24.0%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6066303
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6162730
original bottom strand
Deduplication
Alignments analysed
12229033
Unique alignments
10289878
Duplicates removed
1939155
Duplicated alignments were found at 929619 different positions