CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 184399 290777 38.81 475176 2 172220 313051 35.49 485271 3 155115 267831 36.67 422946 4 155047 194118 44.41 349165 5 147040 164152 47.25 311192 6 147921 139012 51.55 286933 7 160133 133386 54.56 293519 8 71463 154071 31.69 225534 9 63998 141578 31.13 205576 10 63935 133881 32.32 197816 11 65672 136819 32.43 202491 12 63051 140490 30.98 203541 13 61627 144708 29.87 206335 14 57967 142813 28.87 200780 15 56620 145201 28.05 201821 16 52288 141261 27.02 193549 17 48943 137770 26.21 186713 18 50285 138788 26.60 189073 19 49753 141005 26.08 190758 20 50541 141614 26.30 192155 21 51278 144227 26.23 195505 22 50595 142458 26.21 193053 23 49710 141055 26.06 190765 24 49438 140424 26.04 189862 25 47880 139740 25.52 187620 26 48049 136748 26.00 184797 27 47737 141639 25.21 189376 28 50247 140272 26.37 190519 29 48505 144737 25.10 193242 30 47439 140712 25.21 188151 31 48503 138342 25.96 186845 32 47294 134878 25.96 182172 33 48107 135270 26.23 183377 34 49260 135589 26.65 184849 35 47543 133751 26.22 181294 36 47000 135712 25.72 182712 37 45683 132442 25.65 178125 38 45518 133174 25.47 178692 39 46735 135370 25.66 182105 40 46810 133235 26.00 180045 41 47044 133728 26.02 180772 42 47853 136034 26.02 183887 43 47016 134285 25.93 181301 44 46255 132681 25.85 178936 45 46986 132641 26.16 179627 46 47902 133728 26.37 181630 47 47208 131555 26.41 178763 48 46896 131842 26.24 178738 49 48131 131817 26.75 179948 50 46315 135164 25.52 181479 51 46530 133652 25.82 180182 52 46780 139006 25.18 185786 53 45514 131477 25.72 176991 54 44704 130166 25.56 174870 55 44394 126060 26.04 170454 56 44596 124669 26.35 169265 57 44954 126580 26.21 171534 58 44840 126510 26.17 171350 59 44877 125659 26.32 170536 60 43715 125947 25.77 169662 61 44817 124266 26.51 169083 62 43488 127450 25.44 170938 63 42798 125083 25.49 167881 64 42562 125021 25.40 167583 65 43537 122962 26.15 166499 66 43918 123329 26.26 167247 67 43120 121934 26.12 165054 68 42223 121560 25.78 163783 69 41690 119415 25.88 161105 70 41811 120087 25.83 161898 71 40868 118773 25.60 159641 72 40891 118470 25.66 159361 73 40468 117371 25.64 157839 74 40000 115821 25.67 155821 75 38946 114991 25.30 153937 76 39067 113484 25.61 152551 77 39910 112844 26.13 152754 78 39308 114217 25.60 153525 79 39124 112248 25.85 151372 80 38122 111948 25.40 150070 81 38025 111415 25.44 149440 82 37121 110717 25.11 147838 83 37619 111471 25.23 149090 84 37684 112052 25.17 149736 85 37168 110804 25.12 147972 86 36463 107929 25.25 144392 87 35878 107929 24.95 143807 88 36043 107883 25.04 143926 89 35517 106266 25.05 141783 90 35602 106324 25.08 141926 91 35153 103295 25.39 138448 92 34066 103880 24.70 137946 93 34069 104366 24.61 138435 94 34410 102607 25.11 137017 95 33996 102064 24.99 136060 96 34531 104288 24.87 138819 97 32787 99301 24.82 132088 98 30825 93054 24.88 123879 99 23761 73951 24.32 97712 100 31941 93840 25.39 125781 101 29068 93224 23.77 122292 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 264052 269526 49.49 533578 2 155042 238756 39.37 393798 3 57716 236795 19.60 294511 4 26149 247124 9.57 273273 5 15510 231538 6.28 247048 6 13530 220318 5.79 233848 7 9634 285711 3.26 295345 8 3831 312446 1.21 316277 9 3104 291107 1.06 294211 10 3103 276125 1.11 279228 11 3177 277831 1.13 281008 12 3086 276911 1.10 279997 13 2709 266227 1.01 268936 14 2235 266162 0.83 268397 15 2264 271859 0.83 274123 16 2079 272975 0.76 275054 17 2028 270595 0.74 272623 18 1942 268523 0.72 270465 19 1861 269125 0.69 270986 20 1954 281921 0.69 283875 21 1957 286926 0.68 288883 22 1945 283174 0.68 285119 23 2008 287098 0.69 289106 24 1912 287798 0.66 289710 25 1963 278435 0.70 280398 26 2069 280965 0.73 283034 27 2023 283291 0.71 285314 28 1975 282960 0.69 284935 29 2099 285080 0.73 287179 30 1973 288271 0.68 290244 31 2004 281338 0.71 283342 32 2003 282881 0.70 284884 33 2015 284155 0.70 286170 34 2021 280086 0.72 282107 35 2125 280870 0.75 282995 36 2059 280146 0.73 282205 37 2004 274458 0.72 276462 38 2070 278823 0.74 280893 39 2079 276140 0.75 278219 40 2035 275538 0.73 277573 41 2001 274752 0.72 276753 42 2022 276122 0.73 278144 43 1969 273211 0.72 275180 44 2076 277538 0.74 279614 45 2146 275443 0.77 277589 46 2126 272956 0.77 275082 47 2193 273211 0.80 275404 48 2229 277745 0.80 279974 49 2140 271867 0.78 274007 50 2224 273461 0.81 275685 51 2079 274695 0.75 276774 52 2146 273165 0.78 275311 53 2294 270563 0.84 272857 54 2293 274187 0.83 276480 55 2157 269292 0.79 271449 56 2287 272132 0.83 274419 57 2298 269896 0.84 272194 58 2446 268119 0.90 270565 59 2338 271074 0.86 273412 60 2265 271180 0.83 273445 61 2366 269558 0.87 271924 62 2482 270309 0.91 272791 63 2297 267015 0.85 269312 64 2421 268563 0.89 270984 65 2473 265988 0.92 268461 66 2398 262003 0.91 264401 67 2360 255599 0.91 257959 68 2495 259017 0.95 261512 69 2482 258128 0.95 260610 70 2308 253969 0.90 256277 71 2345 253348 0.92 255693 72 2381 252671 0.93 255052 73 2261 249123 0.90 251384 74 2319 247387 0.93 249706 75 2291 248132 0.91 250423 76 2344 243640 0.95 245984 77 2352 244121 0.95 246473 78 2211 241609 0.91 243820 79 2279 237661 0.95 239940 80 2195 235974 0.92 238169 81 2182 234245 0.92 236427 82 2235 232229 0.95 234464 83 2309 236010 0.97 238319 84 2177 235873 0.91 238050 85 2295 231049 0.98 233344 86 2290 234500 0.97 236790 87 2347 232852 1.00 235199 88 2226 229478 0.96 231704 89 2354 228161 1.02 230515 90 2307 228560 1.00 230867 91 2438 224788 1.07 227226 92 2546 226366 1.11 228912 93 2547 224094 1.12 226641 94 2426 219524 1.09 221950 95 2471 218604 1.12 221075 96 2510 216941 1.14 219451 97 2420 198877 1.20 201297 98 2138 182871 1.16 185009 99 1477 118328 1.23 119805 100 1577 120280 1.29 121857 101 3263 196234 1.64 199497 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 209925 286549 42.28 496474 2 93892 304896 23.54 398788 3 42222 414694 9.24 456916 4 35072 447644 7.27 482716 5 31105 544672 5.40 575777 6 24593 603153 3.92 627746 7 22269 794558 2.73 816827 8 11623 862068 1.33 873691 9 8868 788153 1.11 797021 10 8787 770892 1.13 779679 11 9379 773399 1.20 782778 12 8137 793187 1.02 801324 13 8772 812041 1.07 820813 14 9124 831465 1.09 840589 15 8054 853313 0.94 861367 16 8011 871569 0.91 879580 17 8650 876318 0.98 884968 18 8148 908911 0.89 917059 19 7981 928709 0.85 936690 20 8934 956335 0.93 965269 21 8092 955483 0.84 963575 22 8322 955394 0.86 963716 23 8972 956704 0.93 965676 24 7962 959854 0.82 967816 25 8502 963785 0.87 972287 26 9051 970271 0.92 979322 27 8180 971401 0.84 979581 28 8021 971742 0.82 979763 29 8945 968464 0.92 977409 30 8045 956957 0.83 965002 31 8335 942309 0.88 950644 32 8891 951430 0.93 960321 33 8053 946642 0.84 954695 34 8805 952086 0.92 960891 35 8941 943456 0.94 952397 36 8284 951063 0.86 959347 37 7945 944699 0.83 952644 38 8811 946117 0.92 954928 39 7958 941104 0.84 949062 40 8269 944779 0.87 953048 41 9150 947526 0.96 956676 42 8393 956005 0.87 964398 43 8523 941326 0.90 949849 44 8743 945776 0.92 954519 45 8256 937699 0.87 945955 46 8427 940088 0.89 948515 47 8838 935074 0.94 943912 48 8121 934189 0.86 942310 49 8425 921706 0.91 930131 50 8936 920853 0.96 929789 51 8020 909524 0.87 917544 52 8392 907330 0.92 915722 53 8558 900862 0.94 909420 54 8096 902664 0.89 910760 55 8365 903634 0.92 911999 56 8725 900533 0.96 909258 57 7957 913607 0.86 921564 58 9219 902310 1.01 911529 59 8979 916467 0.97 925446 60 7920 901479 0.87 909399 61 8236 896545 0.91 904781 62 8700 890743 0.97 899443 63 7702 883668 0.86 891370 64 8484 879690 0.96 888174 65 8724 878856 0.98 887580 66 7881 874582 0.89 882463 67 8116 872003 0.92 880119 68 8517 867706 0.97 876223 69 7773 861619 0.89 869392 70 7896 861401 0.91 869297 71 8611 854676 1.00 863287 72 7758 852691 0.90 860449 73 8232 844093 0.97 852325 74 8214 841684 0.97 849898 75 7596 839820 0.90 847416 76 7878 834437 0.94 842315 77 8277 831071 0.99 839348 78 7437 824893 0.89 832330 79 7562 821363 0.91 828925 80 8068 818346 0.98 826414 81 7472 807582 0.92 815054 82 7671 800773 0.95 808444 83 8085 805142 0.99 813227 84 7387 792994 0.92 800381 85 7540 786942 0.95 794482 86 7825 781574 0.99 789399 87 7432 778746 0.95 786178 88 7176 776053 0.92 783229 89 7840 769428 1.01 777268 90 7233 763912 0.94 771145 91 7248 756495 0.95 763743 92 7585 756243 0.99 763828 93 7021 749047 0.93 756068 94 7168 742028 0.96 749196 95 7611 734219 1.03 741830 96 7017 721346 0.96 728363 97 6856 701693 0.97 708549 98 6841 654116 1.04 660957 99 4508 448914 0.99 453422 100 4755 402238 1.17 406993 101 7209 658372 1.08 665581 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 103801 131070 44.19 234871 2 91707 118332 43.66 210039 3 101205 132773 43.25 233978 4 95645 148749 39.14 244394 5 41277 185395 18.21 226672 6 24149 99988 19.45 124137 7 22317 107564 17.18 129881 8 23062 100270 18.70 123332 9 20932 89921 18.88 110853 10 23602 98036 19.40 121638 11 24870 95228 20.71 120098 12 24540 92075 21.04 116615 13 25036 90428 21.68 115464 14 26296 90861 22.45 117157 15 25625 84258 23.32 109883 16 24856 82825 23.08 107681 17 29272 90053 24.53 119325 18 28226 86685 24.56 114911 19 27261 82147 24.92 109408 20 25444 80773 23.95 106217 21 26745 79292 25.22 106037 22 26588 81025 24.71 107613 23 25211 78882 24.22 104093 24 23795 73842 24.37 97637 25 26086 80099 24.57 106185 26 24241 75292 24.35 99533 27 25839 76373 25.28 102212 28 24441 73974 24.83 98415 29 25046 76125 24.76 101171 30 24203 71405 25.31 95608 31 23145 71551 24.44 94696 32 22515 68492 24.74 91007 33 24593 69207 26.22 93800 34 23368 70866 24.80 94234 35 28356 75118 27.40 103474 36 24203 69012 25.96 93215 37 24541 70090 25.93 94631 38 22138 67227 24.77 89365 39 23246 66485 25.91 89731 40 24411 67903 26.44 92314 41 22245 64806 25.55 87051 42 22439 65339 25.56 87778 43 22790 64956 25.97 87746 44 21296 63743 25.04 85039 45 25204 67202 27.28 92406 46 20768 60294 25.62 81062 47 21218 60182 26.07 81400 48 20732 59644 25.79 80376 49 20284 59371 25.46 79655 50 19191 57475 25.03 76666 51 19293 57239 25.21 76532 52 19409 57450 25.25 76859 53 20090 55802 26.47 75892 54 19293 55935 25.65 75228 55 19510 56196 25.77 75706 56 18336 54884 25.04 73220 57 18928 53701 26.06 72629 58 18778 53653 25.93 72431 59 18220 51649 26.08 69869 60 18676 52042 26.41 70718 61 16985 50322 25.24 67307 62 16704 50548 24.84 67252 63 17897 49821 26.43 67718 64 16985 49353 25.60 66338 65 16409 46873 25.93 63282 66 17189 47795 26.45 64984 67 15843 47910 24.85 63753 68 17334 48528 26.32 65862 69 15729 45347 25.75 61076 70 15336 46019 25.00 61355 71 15934 43392 26.86 59326 72 15135 43771 25.69 58906 73 15167 44064 25.61 59231 74 14147 42278 25.07 56425 75 14063 41690 25.22 55753 76 14308 41428 25.67 55736 77 13994 41023 25.44 55017 78 14217 41141 25.68 55358 79 13317 40517 24.74 53834 80 13106 39806 24.77 52912 81 13257 39334 25.21 52591 82 13356 39389 25.32 52745 83 13151 38208 25.61 51359 84 14177 40258 26.04 54435 85 12845 37741 25.39 50586 86 12318 37789 24.58 50107 87 12274 36298 25.27 48572 88 12272 36369 25.23 48641 89 12918 36462 26.16 49380 90 12681 35641 26.24 48322 91 12236 35252 25.77 47488 92 11782 34346 25.54 46128 93 11788 34571 25.43 46359 94 12086 34286 26.06 46372 95 11781 33852 25.82 45633 96 11729 33733 25.80 45462 97 12118 34349 26.08 46467 98 11185 30913 26.57 42098 99 9664 0 100.00 9664 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33341 178900 15.71 212241 2 34689 180551 16.12 215240 3 32367 182821 15.04 215188 4 35709 189173 15.88 224882 5 2533 348936 0.72 351469 6 1850 420114 0.44 421964 7 1182 229270 0.51 230452 8 1200 242861 0.49 244061 9 1083 209445 0.51 210528 10 1091 200242 0.54 201333 11 1404 252098 0.55 253502 12 1148 210340 0.54 211488 13 1164 209294 0.55 210458 14 1150 203797 0.56 204947 15 1140 192451 0.59 193591 16 1058 181524 0.58 182582 17 1226 193957 0.63 195183 18 1209 174145 0.69 175354 19 1155 171253 0.67 172408 20 1074 168767 0.63 169841 21 1096 164867 0.66 165963 22 1073 174727 0.61 175800 23 1036 173683 0.59 174719 24 967 160216 0.60 161183 25 977 162755 0.60 163732 26 1048 167871 0.62 168919 27 989 158374 0.62 159363 28 934 150027 0.62 150961 29 1041 158915 0.65 159956 30 985 157952 0.62 158937 31 935 150299 0.62 151234 32 891 152935 0.58 153826 33 983 172216 0.57 173199 34 881 149373 0.59 150254 35 933 152286 0.61 153219 36 908 153136 0.59 154044 37 814 141240 0.57 142054 38 894 145868 0.61 146762 39 805 139307 0.57 140112 40 886 137713 0.64 138599 41 825 134842 0.61 135667 42 879 128492 0.68 129371 43 787 130045 0.60 130832 44 783 131454 0.59 132237 45 772 124882 0.61 125654 46 774 125390 0.61 126164 47 766 128226 0.59 128992 48 801 124171 0.64 124972 49 801 124998 0.64 125799 50 771 122135 0.63 122906 51 752 116573 0.64 117325 52 718 115911 0.62 116629 53 776 127433 0.61 128209 54 728 117967 0.61 118695 55 717 114008 0.62 114725 56 726 116169 0.62 116895 57 699 110645 0.63 111344 58 672 108220 0.62 108892 59 690 112090 0.61 112780 60 706 107650 0.65 108356 61 665 108435 0.61 109100 62 715 108672 0.65 109387 63 763 107266 0.71 108029 64 664 102600 0.64 103264 65 722 104625 0.69 105347 66 637 99460 0.64 100097 67 688 104239 0.66 104927 68 660 101751 0.64 102411 69 647 101731 0.63 102378 70 652 100010 0.65 100662 71 646 100731 0.64 101377 72 611 95289 0.64 95900 73 602 93791 0.64 94393 74 556 96708 0.57 97264 75 611 94285 0.64 94896 76 531 89257 0.59 89788 77 569 93551 0.60 94120 78 545 88146 0.61 88691 79 530 89083 0.59 89613 80 534 86664 0.61 87198 81 482 83828 0.57 84310 82 536 82482 0.65 83018 83 555 82847 0.67 83402 84 517 81092 0.63 81609 85 503 85937 0.58 86440 86 549 80619 0.68 81168 87 497 80157 0.62 80654 88 508 76930 0.66 77438 89 518 79581 0.65 80099 90 525 77580 0.67 78105 91 528 79366 0.66 79894 92 488 76586 0.63 77074 93 478 73716 0.64 74194 94 487 72771 0.66 73258 95 540 74884 0.72 75424 96 470 71731 0.65 72201 97 486 70241 0.69 70727 98 395 67962 0.58 68357 99 286 0 100.00 286 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45295 245829 15.56 291124 2 36653 204145 15.22 240798 3 37825 210795 15.21 248620 4 37664 205207 15.51 242871 5 4097 397053 1.02 401150 6 3802 549237 0.69 553039 7 4427 741180 0.59 745607 8 4819 734576 0.65 739395 9 4826 691266 0.69 696092 10 4800 710451 0.67 715251 11 4734 695855 0.68 700589 12 4899 650172 0.75 655071 13 4686 667098 0.70 671784 14 4710 670749 0.70 675459 15 4735 678155 0.69 682890 16 4592 649053 0.70 653645 17 4690 647926 0.72 652616 18 4600 644621 0.71 649221 19 4338 608021 0.71 612359 20 4584 630895 0.72 635479 21 4384 606778 0.72 611162 22 4199 590140 0.71 594339 23 4185 577177 0.72 581362 24 4114 558400 0.73 562514 25 4280 559082 0.76 563362 26 4133 556993 0.74 561126 27 4510 586862 0.76 591372 28 4129 562702 0.73 566831 29 3878 549965 0.70 553843 30 4086 539172 0.75 543258 31 3920 534361 0.73 538281 32 3759 523036 0.71 526795 33 3778 515462 0.73 519240 34 3926 509337 0.76 513263 35 4161 524226 0.79 528387 36 4029 515502 0.78 519531 37 3872 514857 0.75 518729 38 3982 532436 0.74 536418 39 3955 495344 0.79 499299 40 3755 510376 0.73 514131 41 3599 490202 0.73 493801 42 3741 496788 0.75 500529 43 3695 478823 0.77 482518 44 3578 474343 0.75 477921 45 3628 475473 0.76 479101 46 3605 479652 0.75 483257 47 3421 470671 0.72 474092 48 3523 461279 0.76 464802 49 3405 465819 0.73 469224 50 3310 459856 0.71 463166 51 3370 450243 0.74 453613 52 3287 430522 0.76 433809 53 3244 429034 0.75 432278 54 3071 420643 0.72 423714 55 3120 430130 0.72 433250 56 3083 417299 0.73 420382 57 3139 428135 0.73 431274 58 3099 415724 0.74 418823 59 2922 402422 0.72 405344 60 2996 413475 0.72 416471 61 2824 398311 0.70 401135 62 2899 396003 0.73 398902 63 2786 392607 0.70 395393 64 2729 381075 0.71 383804 65 2736 383706 0.71 386442 66 2717 371519 0.73 374236 67 2614 371491 0.70 374105 68 2759 379657 0.72 382416 69 2719 370118 0.73 372837 70 2536 358402 0.70 360938 71 2616 357678 0.73 360294 72 2618 354401 0.73 357019 73 2606 352322 0.73 354928 74 2487 353074 0.70 355561 75 2532 349135 0.72 351667 76 2427 337037 0.71 339464 77 2445 334357 0.73 336802 78 2572 335912 0.76 338484 79 2409 337936 0.71 340345 80 2332 326666 0.71 328998 81 2399 324984 0.73 327383 82 2337 322197 0.72 324534 83 2332 317952 0.73 320284 84 2361 314267 0.75 316628 85 2337 312214 0.74 314551 86 2223 310362 0.71 312585 87 2296 306289 0.74 308585 88 2155 297785 0.72 299940 89 2223 297388 0.74 299611 90 2249 294853 0.76 297102 91 2224 294338 0.75 296562 92 2085 290360 0.71 292445 93 2044 286916 0.71 288960 94 2134 282188 0.75 284322 95 2049 279580 0.73 281629 96 1930 273248 0.70 275178 97 1941 271734 0.71 273675 98 1649 257426 0.64 259075 99 1245 0 100.00 1245