/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
24140505
Paired-end alignments with a unique best hit
11050083
Pairs without alignments under any condition
10973461
Pairs that did not map uniquely
2116961
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
343610405
Methylated C's in CpG context
11964980
Methylated C's in CHG context
1672574
Methylated C's in CHH context
2746920
Methylated C's in Unknown context
46814
Unmethylated C's in CpG context
35958013
Unmethylated C's in CHG context
69824544
Unmethylated C's in CHH context
221443374
Unmethylated C's in Unknown context
719473
Percentage methylation (CpG context)
25.0%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5486119
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5563961
original bottom strand
Deduplication
Alignments analysed
11050080
Unique alignments
9470106
Duplicates removed
1579974
Duplicated alignments were found at 825606 different positions
