EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10413822 lines in total Total number of methylation call strings processed: 20827644 Final Cytosine Methylation Report ================================= Total number of C's analysed: 243953258 Total methylated C's in CpG context: 8558544 Total methylated C's in CHG context: 1135855 Total methylated C's in CHH context: 2017566 Total C to T conversions in CpG context: 25838202 Total C to T conversions in CHG context: 48531203 Total C to T conversions in CHH context: 157871888 C methylated in CpG context: 24.9% C methylated in CHG context: 2.3% C methylated in CHH context: 1.3%