/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
27014996
Paired-end alignments with a unique best hit
12312883
Pairs without alignments under any condition
12235438
Pairs that did not map uniquely
2466675
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
377453061
Methylated C's in CpG context
13097257
Methylated C's in CHG context
1893893
Methylated C's in CHH context
2999476
Methylated C's in Unknown context
59372
Unmethylated C's in CpG context
39327878
Unmethylated C's in CHG context
76742866
Unmethylated C's in CHH context
243391691
Unmethylated C's in Unknown context
784343
Percentage methylation (CpG context)
25.0%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6118719
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6194163
original bottom strand
Deduplication
Alignments analysed
12312882
Unique alignments
10466822
Duplicates removed
1846060
Duplicated alignments were found at 941145 different positions
