/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R2_001_val_2.fq.gz
Data processed at 02:53 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
30015261
Paired-end alignments with a unique best hit
13633936
Pairs without alignments under any condition
13665400
Pairs that did not map uniquely
2715925
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
418448650
Methylated C's in CpG context
15436769
Methylated C's in CHG context
2036052
Methylated C's in CHH context
3597610
Methylated C's in Unknown context
67853
Unmethylated C's in CpG context
41191940
Unmethylated C's in CHG context
85561381
Unmethylated C's in CHH context
270624898
Unmethylated C's in Unknown context
900361
Percentage methylation (CpG context)
27.3%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6781130
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6852805
original bottom strand
Deduplication
Alignments analysed
13633935
Unique alignments
11613745
Duplicates removed
2020190
Duplicated alignments were found at 1117791 different positions
