CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 74531 99891 42.73 174422 2 75488 106788 41.41 182276 3 72077 93997 43.40 166074 4 75276 75484 49.93 150760 5 73118 65303 52.82 138421 6 75159 54150 58.12 129309 7 84626 55487 60.40 140113 8 39848 60701 39.63 100549 9 34712 55412 38.52 90124 10 34581 54231 38.94 88812 11 36562 56214 39.41 92776 12 35315 57554 38.03 92869 13 34576 59989 36.56 94565 14 33541 59289 36.13 92830 15 33094 60275 35.44 93369 16 30979 59771 34.14 90750 17 29278 58435 33.38 87713 18 29990 58990 33.70 88980 19 29667 60106 33.05 89773 20 29546 60259 32.90 89805 21 29989 60462 33.15 90451 22 29222 59554 32.92 88776 23 29251 59162 33.08 88413 24 28960 59290 32.82 88250 25 28658 58694 32.81 87352 26 28660 58368 32.93 87028 27 28604 59798 32.36 88402 28 29309 59005 33.19 88314 29 28536 60245 32.14 88781 30 28460 58582 32.70 87042 31 28608 57591 33.19 86199 32 27817 56715 32.91 84532 33 27997 56774 33.03 84771 34 28966 56996 33.70 85962 35 28117 56517 33.22 84634 36 27724 57744 32.44 85468 37 26988 55526 32.71 82514 38 26654 55372 32.49 82026 39 27384 56766 32.54 84150 40 27092 55339 32.87 82431 41 26906 55097 32.81 82003 42 27617 55922 33.06 83539 43 26555 54450 32.78 81005 44 26612 54422 32.84 81034 45 26604 53758 33.11 80362 46 27018 54752 33.04 81770 47 26472 53069 33.28 79541 48 26358 52910 33.25 79268 49 26786 52865 33.63 79651 50 25719 53300 32.55 79019 51 25909 53041 32.82 78950 52 26011 55534 31.90 81545 53 24904 51886 32.43 76790 54 24529 51387 32.31 75916 55 24339 49801 32.83 74140 56 24087 49209 32.86 73296 57 24262 49127 33.06 73389 58 24440 49883 32.88 74323 59 24116 48902 33.03 73018 60 23451 49079 32.33 72530 61 24205 48190 33.43 72395 62 22865 48196 32.18 71061 63 22553 48011 31.96 70564 64 22517 47060 32.36 69577 65 22698 46826 32.65 69524 66 23033 47652 32.59 70685 67 22380 46235 32.62 68615 68 21863 45942 32.24 67805 69 21802 45456 32.42 67258 70 21319 45178 32.06 66497 71 20921 44485 31.99 65406 72 20552 43748 31.96 64300 73 20640 43209 32.33 63849 74 20576 42469 32.64 63045 75 19867 42479 31.87 62346 76 19904 42026 32.14 61930 77 20500 41623 33.00 62123 78 19956 41886 32.27 61842 79 19718 41150 32.39 60868 80 19083 40869 31.83 59952 81 18918 40578 31.80 59496 82 18533 39408 31.99 57941 83 19102 40352 32.13 59454 84 18803 40095 31.92 58898 85 18555 39508 31.96 58063 86 18464 38697 32.30 57161 87 17538 38523 31.28 56061 88 17532 38439 31.32 55971 89 17295 37810 31.39 55105 90 17090 37741 31.17 54831 91 16840 36716 31.44 53556 92 16861 36736 31.46 53597 93 16725 36770 31.26 53495 94 16705 36179 31.59 52884 95 16365 35715 31.42 52080 96 16634 36715 31.18 53349 97 15939 34915 31.34 50854 98 15014 32429 31.65 47443 99 11820 26018 31.24 37838 100 15150 32408 31.86 47558 101 14177 31843 30.81 46020 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 99897 130548 43.35 230445 2 57446 122228 31.97 179674 3 22273 120595 15.59 142868 4 10469 119858 8.03 130327 5 7045 108660 6.09 115705 6 8159 105494 7.18 113653 7 4808 131216 3.53 136024 8 2169 141845 1.51 144014 9 1713 135801 1.25 137514 10 1682 131504 1.26 133186 11 1881 134087 1.38 135968 12 1761 133437 1.30 135198 13 1661 129154 1.27 130815 14 1516 127887 1.17 129403 15 1479 130850 1.12 132329 16 1311 131769 0.99 133080 17 1319 131368 0.99 132687 18 1248 128755 0.96 130003 19 1270 128449 0.98 129719 20 1457 135493 1.06 136950 21 1357 137862 0.97 139219 22 1409 134962 1.03 136371 23 1417 137572 1.02 138989 24 1431 137083 1.03 138514 25 1448 133150 1.08 134598 26 1710 134319 1.26 136029 27 1475 134934 1.08 136409 28 1337 134868 0.98 136205 29 1593 135779 1.16 137372 30 1381 136828 1.00 138209 31 1452 133238 1.08 134690 32 1414 134169 1.04 135583 33 1518 135035 1.11 136553 34 1415 131798 1.06 133213 35 1768 132558 1.32 134326 36 1517 132103 1.14 133620 37 1466 128145 1.13 129611 38 1713 130637 1.29 132350 39 1600 128526 1.23 130126 40 1469 128183 1.13 129652 41 1354 128238 1.04 129592 42 1416 127243 1.10 128659 43 1468 125147 1.16 126615 44 1536 127622 1.19 129158 45 1473 125709 1.16 127182 46 1452 124521 1.15 125973 47 1583 122718 1.27 124301 48 1504 125499 1.18 127003 49 1424 122460 1.15 123884 50 1653 120619 1.35 122272 51 1550 122493 1.25 124043 52 1462 121894 1.19 123356 53 1520 119843 1.25 121363 54 1564 120303 1.28 121867 55 1488 118004 1.25 119492 56 1524 118715 1.27 120239 57 1704 117355 1.43 119059 58 1491 116192 1.27 117683 59 1530 115828 1.30 117358 60 1426 115315 1.22 116741 61 1441 113892 1.25 115333 62 1590 114695 1.37 116285 63 1546 112526 1.36 114072 64 1478 112926 1.29 114404 65 1751 113166 1.52 114917 66 1444 110065 1.29 111509 67 1406 106764 1.30 108170 68 1567 107536 1.44 109103 69 1426 107230 1.31 108656 70 1382 104317 1.31 105699 71 1344 104395 1.27 105739 72 1355 102786 1.30 104141 73 1372 102467 1.32 103839 74 1478 101679 1.43 103157 75 1326 101492 1.29 102818 76 1246 98963 1.24 100209 77 1493 99990 1.47 101483 78 1276 96751 1.30 98027 79 1288 95727 1.33 97015 80 1280 94309 1.34 95589 81 1357 92664 1.44 94021 82 1207 91412 1.30 92619 83 1275 93963 1.34 95238 84 1183 93310 1.25 94493 85 1241 92189 1.33 93430 86 1232 92128 1.32 93360 87 1151 92246 1.23 93397 88 1385 89981 1.52 91366 89 1164 89554 1.28 90718 90 1201 88333 1.34 89534 91 1257 87783 1.41 89040 92 1206 87571 1.36 88777 93 1272 86149 1.46 87421 94 1227 85049 1.42 86276 95 1288 83681 1.52 84969 96 1271 83186 1.50 84457 97 1259 75893 1.63 77152 98 1140 68876 1.63 70016 99 735 45244 1.60 45979 100 844 45842 1.81 46686 101 1728 74009 2.28 75737 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 112523 178527 38.66 291050 2 57138 189175 23.20 246313 3 28085 225577 11.07 253662 4 24220 237217 9.26 261437 5 23298 277718 7.74 301016 6 19446 303559 6.02 323005 7 15251 384569 3.81 399820 8 10764 416166 2.52 426930 9 8100 385301 2.06 393401 10 7931 375477 2.07 383408 11 9703 375796 2.52 385499 12 7907 376065 2.06 383972 13 9155 383247 2.33 392402 14 9831 392174 2.45 402005 15 8725 402086 2.12 410811 16 8034 405596 1.94 413630 17 9676 408002 2.32 417678 18 8289 420412 1.93 428701 19 8035 426949 1.85 434984 20 9359 441170 2.08 450529 21 8253 440909 1.84 449162 22 9071 441928 2.01 450999 23 9720 440174 2.16 449894 24 8410 438361 1.88 446771 25 9088 437889 2.03 446977 26 9999 441412 2.22 451411 27 8448 442982 1.87 451430 28 8022 444270 1.77 452292 29 9787 441508 2.17 451295 30 8365 434293 1.89 442658 31 8550 429160 1.95 437710 32 9248 429328 2.11 438576 33 8125 426875 1.87 435000 34 9515 427662 2.18 437177 35 9720 423086 2.25 432806 36 8381 426725 1.93 435106 37 7939 421122 1.85 429061 38 9502 420631 2.21 430133 39 8066 415813 1.90 423879 40 7983 414230 1.89 422213 41 9269 414825 2.19 424094 42 8257 417793 1.94 426050 43 8860 410637 2.11 419497 44 9343 413795 2.21 423138 45 8353 405681 2.02 414034 46 8025 404796 1.94 412821 47 9332 399467 2.28 408799 48 7638 398696 1.88 406334 49 7897 393541 1.97 401438 50 9120 389379 2.29 398499 51 7732 384915 1.97 392647 52 8301 381267 2.13 389568 53 8883 377507 2.30 386390 54 7812 377344 2.03 385156 55 7680 375213 2.01 382893 56 8861 372035 2.33 380896 57 7966 373434 2.09 381400 58 7457 370734 1.97 378191 59 8589 373494 2.25 382083 60 7118 365527 1.91 372645 61 7908 363537 2.13 371445 62 8206 358776 2.24 366982 63 7092 355177 1.96 362269 64 7879 352286 2.19 360165 65 8284 349403 2.32 357687 66 6846 346432 1.94 353278 67 7072 343264 2.02 350336 68 7976 340701 2.29 348677 69 6764 338780 1.96 345544 70 6958 336105 2.03 343063 71 7670 332714 2.25 340384 72 6663 330630 1.98 337293 73 7564 324520 2.28 332084 74 7469 324541 2.25 332010 75 6638 322086 2.02 328724 76 6409 320544 1.96 326953 77 7994 317735 2.45 325729 78 6327 312960 1.98 319287 79 6319 310671 1.99 316990 80 7272 309493 2.30 316765 81 6799 304476 2.18 311275 82 7089 302003 2.29 309092 83 7552 303150 2.43 310702 84 6463 297033 2.13 303496 85 6246 293095 2.09 299341 86 6914 289119 2.34 296033 87 6232 288314 2.12 294546 88 6521 284739 2.24 291260 89 6944 282709 2.40 289653 90 5853 280491 2.04 286344 91 6310 276325 2.23 282635 92 6684 276104 2.36 282788 93 5849 273157 2.10 279006 94 5794 269983 2.10 275777 95 6694 266350 2.45 273044 96 5311 259645 2.00 264956 97 5395 253601 2.08 258996 98 5665 234238 2.36 239903 99 3649 162738 2.19 166387 100 4175 145893 2.78 150068 101 5973 233582 2.49 239555 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57099 52941 51.89 110040 2 47932 40766 54.04 88698 3 51739 46604 52.61 98343 4 46250 50623 47.74 96873 5 20770 63853 24.54 84623 6 13210 35961 26.87 49171 7 11135 37480 22.90 48615 8 11322 33554 25.23 44876 9 10169 29276 25.78 39445 10 10917 32015 25.43 42932 11 11801 31678 27.14 43479 12 11231 30232 27.09 41463 13 11536 29314 28.24 40850 14 12253 30276 28.81 42529 15 11664 27847 29.52 39511 16 10890 26093 29.45 36983 17 13026 29357 30.73 42383 18 12892 28687 31.01 41579 19 12337 27450 31.01 39787 20 11018 26105 29.68 37123 21 11664 25247 31.60 36911 22 12080 25888 31.82 37968 23 11178 25113 30.80 36291 24 10365 23497 30.61 33862 25 11684 25377 31.53 37061 26 10801 24014 31.02 34815 27 11117 24016 31.64 35133 28 10659 23134 31.54 33793 29 10955 24102 31.25 35057 30 10451 22191 32.02 32642 31 10099 22697 30.79 32796 32 9683 21416 31.14 31099 33 11467 22367 33.89 33834 34 10564 23528 30.99 34092 35 12844 25966 33.09 38810 36 10529 22468 31.91 32997 37 10840 22709 32.31 33549 38 9615 20742 31.67 30357 39 10056 21651 31.72 31707 40 11298 21539 34.41 32837 41 9627 20868 31.57 30495 42 9526 21933 30.28 31459 43 9454 20943 31.10 30397 44 9370 20912 30.94 30282 45 11758 23670 33.19 35428 46 8778 18904 31.71 27682 47 9065 19201 32.07 28266 48 9090 19171 32.16 28261 49 8738 19646 30.78 28384 50 8330 18734 30.78 27064 51 8373 18190 31.52 26563 52 8494 18509 31.46 27003 53 8600 18133 32.17 26733 54 8590 18354 31.88 26944 55 8804 18509 32.23 27313 56 7919 17680 30.93 25599 57 8458 18188 31.74 26646 58 8235 17726 31.72 25961 59 7698 16728 31.52 24426 60 8144 17404 31.88 25548 61 7225 16169 30.88 23394 62 7458 16044 31.73 23502 63 8101 16496 32.93 24597 64 7369 16125 31.37 23494 65 7149 15277 31.88 22426 66 7840 15846 33.10 23686 67 7088 16288 30.32 23376 68 8232 17142 32.44 25374 69 7153 14891 32.45 22044 70 6842 14701 31.76 21543 71 7117 14605 32.76 21722 72 6472 14047 31.54 20519 73 6641 14388 31.58 21029 74 6053 13621 30.77 19674 75 5951 13709 30.27 19660 76 6184 13401 31.58 19585 77 6032 13186 31.39 19218 78 5956 13278 30.97 19234 79 5829 13227 30.59 19056 80 5668 12999 30.36 18667 81 5681 12755 30.81 18436 82 5768 12892 30.91 18660 83 5800 12621 31.49 18421 84 6538 13942 31.92 20480 85 5484 12409 30.65 17893 86 5310 12121 30.46 17431 87 5492 12118 31.19 17610 88 5400 11777 31.44 17177 89 5738 12246 31.91 17984 90 5619 11974 31.94 17593 91 5139 11704 30.51 16843 92 5082 11302 31.02 16384 93 5110 11051 31.62 16161 94 5341 11271 32.15 16612 95 5053 11236 31.02 16289 96 5095 11102 31.46 16197 97 5656 11999 32.04 17655 98 4895 10300 32.21 15195 99 4312 0 100.00 4312 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12650 63704 16.57 76354 2 11893 61260 16.26 73153 3 10693 61527 14.81 72220 4 11528 69724 14.19 81252 5 1329 125238 1.05 126567 6 1077 153577 0.70 154654 7 689 87444 0.78 88133 8 681 91816 0.74 92497 9 554 74930 0.73 75484 10 561 71843 0.77 72404 11 876 102204 0.85 103080 12 616 79473 0.77 80089 13 587 78192 0.75 78779 14 610 72112 0.84 72722 15 612 70001 0.87 70613 16 514 66056 0.77 66570 17 629 69885 0.89 70514 18 788 63202 1.23 63990 19 567 60752 0.92 61319 20 559 60102 0.92 60661 21 859 57445 1.47 58304 22 605 63703 0.94 64308 23 641 64234 0.99 64875 24 460 56385 0.81 56845 25 489 57150 0.85 57639 26 573 60180 0.94 60753 27 499 56585 0.87 57084 28 471 53502 0.87 53973 29 540 58191 0.92 58731 30 511 56702 0.89 57213 31 457 52733 0.86 53190 32 457 53972 0.84 54429 33 548 67630 0.80 68178 34 455 53309 0.85 53764 35 443 56255 0.78 56698 36 453 57452 0.78 57905 37 433 51232 0.84 51665 38 447 54401 0.81 54848 39 432 49098 0.87 49530 40 400 51188 0.78 51588 41 384 48403 0.79 48787 42 420 45886 0.91 46306 43 403 47621 0.84 48024 44 430 46581 0.91 47011 45 408 44014 0.92 44422 46 405 44576 0.90 44981 47 401 45796 0.87 46197 48 435 43541 0.99 43976 49 393 45613 0.85 46006 50 395 43788 0.89 44183 51 394 41563 0.94 41957 52 395 40905 0.96 41300 53 382 46069 0.82 46451 54 412 42251 0.97 42663 55 381 41197 0.92 41578 56 465 40888 1.12 41353 57 524 39603 1.31 40127 58 372 38812 0.95 39184 59 342 40110 0.85 40452 60 490 39344 1.23 39834 61 343 38899 0.87 39242 62 388 39914 0.96 40302 63 349 39068 0.89 39417 64 290 36768 0.78 37058 65 319 38281 0.83 38600 66 326 35424 0.91 35750 67 308 38777 0.79 39085 68 317 36783 0.85 37100 69 350 36646 0.95 36996 70 300 36797 0.81 37097 71 321 37584 0.85 37905 72 261 34835 0.74 35096 73 261 33988 0.76 34249 74 285 35045 0.81 35330 75 293 33860 0.86 34153 76 244 32302 0.75 32546 77 304 34163 0.88 34467 78 280 31899 0.87 32179 79 251 32037 0.78 32288 80 253 31494 0.80 31747 81 280 30399 0.91 30679 82 235 30053 0.78 30288 83 263 29980 0.87 30243 84 272 29675 0.91 29947 85 265 33330 0.79 33595 86 263 29240 0.89 29503 87 271 29057 0.92 29328 88 206 28220 0.72 28426 89 276 29305 0.93 29581 90 257 29194 0.87 29451 91 233 30683 0.75 30916 92 250 28332 0.87 28582 93 230 27520 0.83 27750 94 264 26793 0.98 27057 95 237 27300 0.86 27537 96 284 26163 1.07 26447 97 246 26022 0.94 26268 98 210 25812 0.81 26022 99 209 0 100.00 209 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 16783 75223 18.24 92006 2 14187 58447 19.53 72634 3 14633 62802 18.90 77435 4 13712 63118 17.85 76830 5 3367 134124 2.45 137491 6 3783 182115 2.03 185898 7 3796 253440 1.48 257236 8 4021 247419 1.60 251440 9 4416 233643 1.86 238059 10 4009 241043 1.64 245052 11 4194 236664 1.74 240858 12 4234 223527 1.86 227761 13 3970 231539 1.69 235509 14 3651 231540 1.55 235191 15 3800 241643 1.55 245443 16 3622 233456 1.53 237078 17 3656 230801 1.56 234457 18 3842 228726 1.65 232568 19 3302 211171 1.54 214473 20 3598 228858 1.55 232456 21 3751 215174 1.71 218925 22 3767 204561 1.81 208328 23 3357 202906 1.63 206263 24 3322 194882 1.68 198204 25 3538 194293 1.79 197831 26 3326 193754 1.69 197080 27 3773 210943 1.76 214716 28 3213 196508 1.61 199721 29 3132 191037 1.61 194169 30 3515 186553 1.85 190068 31 3042 183579 1.63 186621 32 3150 176679 1.75 179829 33 3205 176976 1.78 180181 34 3279 176319 1.83 179598 35 3361 183417 1.80 186778 36 3093 179537 1.69 182630 37 2934 178644 1.62 181578 38 3165 190842 1.63 194007 39 3205 170153 1.85 173358 40 2875 182909 1.55 185784 41 2947 169371 1.71 172318 42 2996 176286 1.67 179282 43 2895 165063 1.72 167958 44 2753 162527 1.67 165280 45 3022 163428 1.82 166450 46 2673 165948 1.59 168621 47 2741 161402 1.67 164143 48 2938 157886 1.83 160824 49 2610 164622 1.56 167232 50 2716 159858 1.67 162574 51 2780 155961 1.75 158741 52 2534 147478 1.69 150012 53 2456 146141 1.65 148597 54 2347 144090 1.60 146437 55 2454 151198 1.60 153652 56 2568 143276 1.76 145844 57 2366 151520 1.54 153886 58 2173 143439 1.49 145612 59 2387 137274 1.71 139661 60 2405 143145 1.65 145550 61 2267 136389 1.63 138656 62 2139 133505 1.58 135644 63 2233 135338 1.62 137571 64 2156 129778 1.63 131934 65 2042 133813 1.50 135855 66 2234 127015 1.73 129249 67 2046 127933 1.57 129979 68 2119 134741 1.55 136860 69 2214 130265 1.67 132479 70 1929 122928 1.54 124857 71 1996 121991 1.61 123987 72 2066 122528 1.66 124594 73 1991 121092 1.62 123083 74 1918 121882 1.55 123800 75 1928 120243 1.58 122171 76 1702 115134 1.46 116836 77 1946 114542 1.67 116488 78 1952 116079 1.65 118031 79 1828 118407 1.52 120235 80 1892 113279 1.64 115171 81 2009 114157 1.73 116166 82 1841 111535 1.62 113376 83 1767 110469 1.57 112236 84 1874 109400 1.68 111274 85 1669 107644 1.53 109313 86 1727 107334 1.58 109061 87 1808 106535 1.67 108343 88 1501 102548 1.44 104049 89 1691 102458 1.62 104149 90 1743 101658 1.69 103401 91 1698 101561 1.64 103259 92 1540 99723 1.52 101263 93 1553 98964 1.55 100517 94 1517 98853 1.51 100370 95 1450 95803 1.49 97253 96 1428 94223 1.49 95651 97 1350 94311 1.41 95661 98 1281 89854 1.41 91135 99 881 0 100.00 881