CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 111515 160417 41.01 271932 2 109115 170517 39.02 279632 3 104085 151757 40.68 255842 4 107712 126584 45.97 234296 5 105179 110803 48.70 215982 6 106458 91926 53.66 198384 7 120227 91383 56.82 211610 8 57751 102020 36.15 159771 9 51006 92793 35.47 143799 10 50693 90770 35.83 141463 11 53693 93776 36.41 147469 12 52455 96090 35.31 148545 13 51915 97406 34.77 149321 14 49994 97942 33.79 147936 15 49452 99552 33.19 149004 16 46205 98103 32.02 144308 17 44375 95091 31.82 139466 18 45349 96961 31.87 142310 19 44400 98232 31.13 142632 20 44942 99283 31.16 144225 21 44544 99513 30.92 144057 22 44452 97806 31.25 142258 23 44023 98103 30.97 142126 24 43605 98482 30.69 142087 25 43506 97067 30.95 140573 26 43233 96492 30.94 139725 27 42945 98756 30.31 141701 28 43745 98418 30.77 142163 29 42631 97765 30.36 140396 30 42598 97808 30.34 140406 31 43177 95836 31.06 139013 32 41880 94227 30.77 136107 33 42397 94738 30.92 137135 34 43809 95028 31.55 138837 35 42527 94453 31.05 136980 36 41873 95432 30.50 137305 37 40598 92894 30.41 133492 38 40017 91971 30.32 131988 39 41369 94149 30.53 135518 40 40700 92419 30.57 133119 41 40167 91766 30.44 131933 42 41401 93702 30.64 135103 43 40695 90701 30.97 131396 44 39695 90708 30.44 130403 45 40610 90581 30.95 131191 46 40537 91039 30.81 131576 47 39573 88420 30.92 127993 48 38952 87939 30.70 126891 49 40445 88573 31.35 129018 50 38830 88959 30.39 127789 51 39263 88014 30.85 127277 52 39579 90288 30.48 129867 53 38131 85778 30.77 123909 54 37298 84968 30.51 122266 55 36693 82722 30.73 119415 56 36758 82136 30.92 118894 57 36833 83026 30.73 119859 58 36894 83427 30.66 120321 59 36770 81399 31.12 118169 60 35544 80927 30.52 116471 61 36173 80121 31.10 116294 62 34599 79749 30.26 114348 63 34468 78994 30.38 113462 64 33732 78173 30.14 111905 65 34008 77373 30.53 111381 66 34967 77963 30.96 112930 67 34039 76327 30.84 110366 68 33252 75894 30.47 109146 69 32875 74983 30.48 107858 70 32128 74554 30.12 106682 71 31724 73468 30.16 105192 72 30923 72861 29.80 103784 73 30633 71415 30.02 102048 74 30798 70903 30.28 101701 75 29782 70789 29.61 100571 76 29604 69891 29.75 99495 77 30105 68843 30.43 98948 78 29916 69292 30.15 99208 79 29520 68101 30.24 97621 80 28821 67585 29.90 96406 81 28769 67029 30.03 95798 82 27560 65859 29.50 93419 83 28239 66128 29.92 94367 84 28119 66143 29.83 94262 85 27324 65419 29.46 92743 86 26968 63492 29.81 90460 87 26110 63152 29.25 89262 88 26160 62671 29.45 88831 89 25616 62483 29.08 88099 90 25292 62626 28.77 87918 91 25410 60813 29.47 86223 92 24794 60082 29.21 84876 93 24446 60159 28.89 84605 94 24714 59613 29.31 84327 95 24143 58963 29.05 83106 96 24188 59616 28.86 83804 97 23233 56936 28.98 80169 98 21546 53441 28.73 74987 99 17433 42461 29.11 59894 100 22099 52898 29.47 74997 101 20352 51951 28.15 72303 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 149953 215709 41.01 365662 2 85091 204860 29.35 289951 3 31652 199682 13.68 231334 4 14437 199494 6.75 213931 5 9527 176695 5.12 186222 6 10366 171931 5.69 182297 7 6402 212958 2.92 219360 8 3255 229133 1.40 232388 9 2594 219016 1.17 221610 10 2572 211710 1.20 214282 11 2795 214829 1.28 217624 12 2850 211920 1.33 214770 13 2628 205140 1.26 207768 14 2347 202826 1.14 205173 15 2467 208300 1.17 210767 16 2083 209046 0.99 211129 17 2210 207049 1.06 209259 18 2115 204381 1.02 206496 19 1976 203877 0.96 205853 20 2276 214842 1.05 217118 21 2251 216804 1.03 219055 22 2341 214270 1.08 216611 23 2291 216819 1.05 219110 24 2292 216953 1.05 219245 25 2311 210556 1.09 212867 26 2891 212861 1.34 215752 27 2274 213768 1.05 216042 28 2243 213844 1.04 216087 29 2663 216906 1.21 219569 30 2225 219010 1.01 221235 31 2192 212264 1.02 214456 32 2253 213340 1.05 215593 33 2343 215261 1.08 217604 34 2465 211019 1.15 213484 35 3035 211357 1.42 214392 36 2431 210299 1.14 212730 37 2401 205341 1.16 207742 38 2853 209175 1.35 212028 39 2394 206156 1.15 208550 40 2395 205788 1.15 208183 41 2358 204981 1.14 207339 42 2427 203736 1.18 206163 43 2543 201851 1.24 204394 44 2527 202512 1.23 205039 45 2524 201358 1.24 203882 46 2445 199371 1.21 201816 47 2814 197370 1.41 200184 48 2431 200324 1.20 202755 49 2468 195725 1.25 198193 50 2834 194086 1.44 196920 51 2559 195841 1.29 198400 52 2531 195680 1.28 198211 53 2571 191145 1.33 193716 54 2604 192413 1.34 195017 55 2477 188993 1.29 191470 56 2592 190249 1.34 192841 57 2858 187190 1.50 190048 58 2512 186048 1.33 188560 59 2490 185256 1.33 187746 60 2463 184259 1.32 186722 61 2450 182118 1.33 184568 62 2626 182277 1.42 184903 63 2603 179443 1.43 182046 64 2520 179324 1.39 181844 65 3149 178890 1.73 182039 66 2467 175347 1.39 177814 67 2464 169729 1.43 172193 68 2897 171304 1.66 174201 69 2342 170455 1.36 172797 70 2318 166529 1.37 168847 71 2274 165920 1.35 168194 72 2224 164706 1.33 166930 73 2283 163472 1.38 165755 74 2603 161644 1.58 164247 75 2207 161553 1.35 163760 76 2154 156921 1.35 159075 77 2565 157522 1.60 160087 78 2034 153685 1.31 155719 79 2098 151172 1.37 153270 80 2100 150446 1.38 152546 81 2203 147882 1.47 150085 82 2072 145106 1.41 147178 83 2231 148817 1.48 151048 84 2091 147475 1.40 149566 85 2091 144771 1.42 146862 86 2104 144772 1.43 146876 87 1988 144482 1.36 146470 88 2191 141512 1.52 143703 89 1999 140299 1.40 142298 90 2018 139274 1.43 141292 91 2005 138123 1.43 140128 92 2166 137933 1.55 140099 93 2117 135835 1.53 137952 94 2008 132914 1.49 134922 95 2227 131759 1.66 133986 96 2055 130135 1.55 132190 97 2033 119553 1.67 121586 98 1838 109232 1.65 111070 99 1245 71930 1.70 73175 100 1569 72535 2.12 74104 101 2937 115876 2.47 118813 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 182802 286988 38.91 469790 2 91975 308397 22.97 400372 3 44530 357229 11.08 401759 4 38196 383382 9.06 421578 5 37304 452076 7.62 489380 6 31369 496503 5.94 527872 7 24602 624247 3.79 648849 8 19745 675319 2.84 695064 9 14876 620978 2.34 635854 10 14835 604454 2.40 619289 11 18280 602210 2.95 620490 12 14993 601536 2.43 616529 13 17579 610270 2.80 627849 14 19422 622795 3.02 642217 15 16437 637374 2.51 653811 16 15999 643302 2.43 659301 17 18997 648910 2.84 667907 18 15898 671041 2.31 686939 19 15739 680534 2.26 696273 20 18845 703277 2.61 722122 21 15763 705108 2.19 720871 22 17553 705778 2.43 723331 23 19114 705953 2.64 725067 24 16378 703849 2.27 720227 25 18040 704187 2.50 722227 26 19932 708948 2.73 728880 27 16695 712844 2.29 729539 28 16351 715192 2.24 731543 29 19720 709253 2.71 728973 30 16660 701852 2.32 718512 31 17288 692344 2.44 709632 32 18536 692558 2.61 711094 33 16462 690438 2.33 706900 34 19178 695648 2.68 714826 35 19321 685299 2.74 704620 36 16537 691674 2.34 708211 37 16092 680949 2.31 697041 38 19418 682980 2.76 702398 39 16198 671794 2.35 687992 40 16357 670905 2.38 687262 41 18813 672624 2.72 691437 42 16789 673635 2.43 690424 43 17999 663337 2.64 681336 44 18957 666990 2.76 685947 45 17047 656101 2.53 673148 46 16378 656338 2.43 672716 47 18991 648947 2.84 667938 48 15481 647192 2.34 662673 49 16309 638181 2.49 654490 50 18728 628569 2.89 647297 51 15527 623264 2.43 638791 52 16923 616386 2.67 633309 53 18469 609777 2.94 628246 54 16097 608825 2.58 624922 55 16163 604095 2.61 620258 56 18208 601052 2.94 619260 57 16104 600634 2.61 616738 58 15636 598317 2.55 613953 59 18215 599615 2.95 617830 60 14960 590077 2.47 605037 61 16286 584651 2.71 600937 62 17234 577486 2.90 594720 63 14949 571050 2.55 585999 64 16406 567215 2.81 583621 65 17005 561196 2.94 578201 66 14109 555974 2.47 570083 67 14769 551068 2.61 565837 68 16633 546604 2.95 563237 69 14107 543978 2.53 558085 70 14463 538152 2.62 552615 71 16167 534817 2.93 550984 72 14132 531331 2.59 545463 73 15811 521575 2.94 537386 74 16003 521576 2.98 537579 75 13916 516441 2.62 530357 76 13695 512021 2.61 525716 77 16225 506691 3.10 522916 78 12780 501432 2.49 514212 79 13497 499622 2.63 513119 80 15333 494139 3.01 509472 81 14077 483853 2.83 497930 82 14841 482635 2.98 497476 83 15855 483795 3.17 499650 84 13618 477077 2.78 490695 85 13126 469246 2.72 482372 86 14794 463646 3.09 478440 87 12802 461477 2.70 474279 88 13551 452305 2.91 465856 89 14514 450539 3.12 465053 90 12298 447758 2.67 460056 91 12862 443062 2.82 455924 92 13736 439292 3.03 453028 93 11942 434804 2.67 446746 94 12361 428683 2.80 441044 95 13691 422812 3.14 436503 96 11291 414098 2.65 425389 97 10970 402655 2.65 413625 98 11938 372509 3.11 384447 99 7511 259860 2.81 267371 100 8627 233422 3.56 242049 101 12211 369599 3.20 381810 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 80186 81970 49.45 162156 2 68940 66575 50.87 135515 3 74150 75839 49.44 149989 4 67744 83668 44.74 151412 5 30442 106649 22.21 137091 6 18472 58872 23.88 77344 7 15738 60592 20.62 76330 8 16366 55351 22.82 71717 9 14595 48498 23.13 63093 10 15679 52447 23.01 68126 11 16951 52389 24.45 69340 12 16326 49210 24.91 65536 13 16561 48600 25.42 65161 14 17589 49973 26.03 67562 15 17072 46061 27.04 63133 16 15847 43608 26.65 59455 17 19046 48303 28.28 67349 18 18830 47552 28.37 66382 19 17840 45454 28.19 63294 20 16408 43035 27.60 59443 21 17424 42235 29.21 59659 22 17257 42858 28.71 60115 23 16407 42093 28.05 58500 24 15257 39130 28.05 54387 25 17256 42183 29.03 59439 26 15700 39816 28.28 55516 27 16540 40019 29.24 56559 28 15401 38040 28.82 53441 29 15884 39753 28.55 55637 30 15110 37390 28.78 52500 31 14611 37556 28.01 52167 32 14365 35701 28.69 50066 33 16694 36892 31.15 53586 34 14788 38799 27.60 53587 35 18355 41858 30.48 60213 36 15244 36473 29.48 51717 37 15577 37442 29.38 53019 38 13770 35416 28.00 49186 39 14645 35778 29.04 50423 40 16009 35041 31.36 51050 41 14028 34446 28.94 48474 42 14149 35741 28.36 49890 43 13889 34348 28.79 48237 44 13249 34002 28.04 47251 45 16599 38365 30.20 54964 46 12929 31069 29.39 43998 47 13011 31792 29.04 44803 48 13207 31928 29.26 45135 49 12758 32553 28.16 45311 50 12208 30669 28.47 42877 51 12255 29876 29.09 42131 52 12348 30719 28.67 43067 53 12475 29540 29.69 42015 54 12391 30471 28.91 42862 55 12627 30060 29.58 42687 56 11425 29068 28.21 40493 57 11709 29907 28.14 41616 58 11745 28653 29.07 40398 59 11365 27385 29.33 38750 60 11720 28344 29.25 40064 61 10197 26898 27.49 37095 62 10512 26355 28.51 36867 63 11531 26886 30.02 38417 64 10676 26275 28.89 36951 65 10427 25058 29.38 35485 66 10987 25941 29.75 36928 67 10324 26705 27.88 37029 68 11184 27837 28.66 39021 69 10104 24196 29.46 34300 70 9818 24070 28.97 33888 71 10029 23443 29.96 33472 72 9440 23331 28.81 32771 73 9409 23659 28.45 33068 74 8544 22167 27.82 30711 75 8672 22471 27.85 31143 76 9107 21875 29.39 30982 77 8608 21831 28.28 30439 78 8717 21860 28.51 30577 79 8366 21322 28.18 29688 80 8302 21030 28.30 29332 81 8192 20648 28.40 28840 82 8415 21228 28.39 29643 83 8596 20449 29.60 29045 84 9224 22696 28.90 31920 85 7921 20192 28.18 28113 86 7901 20060 28.26 27961 87 7680 19253 28.52 26933 88 7825 19492 28.65 27317 89 8096 20412 28.40 28508 90 8195 19745 29.33 27940 91 7630 19092 28.55 26722 92 7418 18326 28.81 25744 93 7416 18541 28.57 25957 94 7557 18867 28.60 26424 95 7315 18410 28.44 25725 96 7387 18136 28.94 25523 97 8025 19688 28.96 27713 98 7068 16720 29.71 23788 99 6344 0 100.00 6344 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20076 101999 16.45 122075 2 19118 100543 15.98 119661 3 17603 100154 14.95 117757 4 18886 110996 14.54 129882 5 2135 200234 1.06 202369 6 1665 246911 0.67 248576 7 1049 137563 0.76 138612 8 1041 144595 0.71 145636 9 898 119545 0.75 120443 10 933 114262 0.81 115195 11 1271 155046 0.81 156317 12 1054 123764 0.84 124818 13 958 121532 0.78 122490 14 994 114382 0.86 115376 15 974 111124 0.87 112098 16 905 104264 0.86 105169 17 958 111641 0.85 112599 18 1398 98707 1.40 100105 19 998 96094 1.03 97092 20 913 95052 0.95 95965 21 1508 91102 1.63 92610 22 971 99696 0.96 100667 23 934 99732 0.93 100666 24 778 89172 0.86 89950 25 834 89979 0.92 90813 26 986 94220 1.04 95206 27 814 88311 0.91 89125 28 765 84837 0.89 85602 29 783 90393 0.86 91176 30 809 88644 0.90 89453 31 679 82790 0.81 83469 32 768 85630 0.89 86398 33 844 102931 0.81 103775 34 730 83168 0.87 83898 35 784 86944 0.89 87728 36 714 88161 0.80 88875 37 662 79427 0.83 80089 38 694 84166 0.82 84860 39 746 77723 0.95 78469 40 713 79127 0.89 79840 41 693 75034 0.92 75727 42 685 72309 0.94 72994 43 604 73838 0.81 74442 44 671 73591 0.90 74262 45 641 69421 0.91 70062 46 604 70507 0.85 71111 47 662 71095 0.92 71757 48 680 68558 0.98 69238 49 726 71696 1.00 72422 50 599 68810 0.86 69409 51 665 65212 1.01 65877 52 637 64252 0.98 64889 53 599 71498 0.83 72097 54 654 64931 1.00 65585 55 636 64217 0.98 64853 56 680 64165 1.05 64845 57 889 61785 1.42 62674 58 555 60199 0.91 60754 59 555 62433 0.88 62988 60 812 61906 1.29 62718 61 526 61099 0.85 61625 62 608 62487 0.96 63095 63 560 60869 0.91 61429 64 466 57274 0.81 57740 65 575 59184 0.96 59759 66 500 55722 0.89 56222 67 563 60362 0.92 60925 68 509 57364 0.88 57873 69 489 57523 0.84 58012 70 448 56985 0.78 57433 71 496 58228 0.84 58724 72 449 53985 0.82 54434 73 423 53378 0.79 53801 74 453 55249 0.81 55702 75 451 52764 0.85 53215 76 448 50329 0.88 50777 77 475 53187 0.89 53662 78 449 50176 0.89 50625 79 442 50201 0.87 50643 80 472 48839 0.96 49311 81 419 47862 0.87 48281 82 403 46572 0.86 46975 83 453 46810 0.96 47263 84 401 46110 0.86 46511 85 414 51297 0.80 51711 86 420 45875 0.91 46295 87 386 45231 0.85 45617 88 406 43782 0.92 44188 89 423 45878 0.91 46301 90 440 45562 0.96 46002 91 381 46987 0.80 47368 92 367 44466 0.82 44833 93 387 42204 0.91 42591 94 405 41829 0.96 42234 95 419 43433 0.96 43852 96 457 41247 1.10 41704 97 368 39878 0.91 40246 98 395 39782 0.98 40177 99 324 0 100.00 324 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30392 125997 19.43 156389 2 26369 99604 20.93 125973 3 27759 104599 20.97 132358 4 25830 103705 19.94 129535 5 6944 213513 3.15 220457 6 7770 292166 2.59 299936 7 7750 406170 1.87 413920 8 8377 399760 2.05 408137 9 9162 376097 2.38 385259 10 7949 386495 2.02 394444 11 8595 380087 2.21 388682 12 8752 355586 2.40 364338 13 8029 367827 2.14 375856 14 7414 368778 1.97 376192 15 7638 381763 1.96 389401 16 6988 365736 1.87 372724 17 7299 362300 1.97 369599 18 7808 362651 2.11 370459 19 6797 335895 1.98 342692 20 7242 355442 2.00 362684 21 7463 336528 2.17 343991 22 7197 324620 2.17 331817 23 6649 320492 2.03 327141 24 6617 308983 2.10 315600 25 7083 307313 2.25 314396 26 6661 305420 2.13 312081 27 7393 329720 2.19 337113 28 6316 310417 1.99 316733 29 6244 301479 2.03 307723 30 7170 294434 2.38 301604 31 6188 290177 2.09 296365 32 5987 281405 2.08 287392 33 6540 280420 2.28 286960 34 6409 277588 2.26 283997 35 6416 288710 2.17 295126 36 5944 283926 2.05 289870 37 5397 281713 1.88 287110 38 6193 296254 2.05 302447 39 6299 268095 2.30 274394 40 5691 285255 1.96 290946 41 5762 267066 2.11 272828 42 5956 275450 2.12 281406 43 5753 260674 2.16 266427 44 5433 257459 2.07 262892 45 5692 257692 2.16 263384 46 5033 261948 1.89 266981 47 5287 254802 2.03 260089 48 5659 249084 2.22 254743 49 5101 256297 1.95 261398 50 5331 250868 2.08 256199 51 5424 245921 2.16 251345 52 4913 234968 2.05 239881 53 4654 232343 1.96 236997 54 4532 227498 1.95 232030 55 4474 236592 1.86 241066 56 4788 226573 2.07 231361 57 4677 236703 1.94 241380 58 4273 225642 1.86 229915 59 4550 217541 2.05 222091 60 4583 225304 1.99 229887 61 4507 215912 2.04 220419 62 4171 212067 1.93 216238 63 4349 213481 2.00 217830 64 4226 206062 2.01 210288 65 3951 209526 1.85 213477 66 4345 200985 2.12 205330 67 3647 202169 1.77 205816 68 3946 208817 1.85 212763 69 4337 203642 2.09 207979 70 3675 194370 1.86 198045 71 3774 192583 1.92 196357 72 3932 192563 2.00 196495 73 3753 190495 1.93 194248 74 3590 190725 1.85 194315 75 3564 188165 1.86 191729 76 3408 181449 1.84 184857 77 3721 181065 2.01 184786 78 3839 181936 2.07 185775 79 3399 185649 1.80 189048 80 3663 178367 2.01 182030 81 3817 178297 2.10 182114 82 3528 175214 1.97 178742 83 3384 173469 1.91 176853 84 3586 171148 2.05 174734 85 3241 170068 1.87 173309 86 3199 168972 1.86 172171 87 3432 168209 2.00 171641 88 2933 162176 1.78 165109 89 3129 160783 1.91 163912 90 3387 160632 2.07 164019 91 3253 159857 1.99 163110 92 2840 158371 1.76 161211 93 2946 156615 1.85 159561 94 2874 154454 1.83 157328 95 2741 152129 1.77 154870 96 2838 149074 1.87 151912 97 2424 149707 1.59 152131 98 2275 141074 1.59 143349 99 1771 0 100.00 1771