EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8576017 lines in total Total number of methylation call strings processed: 17152034 Final Cytosine Methylation Report ================================= Total number of C's analysed: 167743909 Total methylated C's in CpG context: 8085260 Total methylated C's in CHG context: 910439 Total methylated C's in CHH context: 2251034 Total C to T conversions in CpG context: 15228220 Total C to T conversions in CHG context: 34537608 Total C to T conversions in CHH context: 106731348 C methylated in CpG context: 34.7% C methylated in CHG context: 2.6% C methylated in CHH context: 2.1%