CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 164721 215864 43.28 380585 2 158796 230383 40.80 389179 3 152272 201707 43.02 353979 4 162698 162352 50.05 325050 5 158398 140072 53.07 298470 6 160827 117213 57.84 278040 7 178578 114309 60.97 292887 8 85392 130646 39.53 216038 9 76045 122280 38.34 198325 10 76371 118474 39.20 194845 11 80197 121112 39.84 201309 12 77552 123917 38.49 201469 13 76805 127091 37.67 203896 14 71621 127053 36.05 198674 15 70240 128550 35.33 198790 16 64976 127818 33.70 192794 17 61364 122886 33.30 184250 18 62236 125749 33.11 187985 19 61420 127024 32.59 188444 20 62630 128819 32.71 191449 21 63389 130160 32.75 193549 22 61659 127650 32.57 189309 23 61477 127548 32.52 189025 24 61252 127482 32.45 188734 25 59937 125584 32.31 185521 26 59682 123966 32.50 183648 27 59960 128403 31.83 188363 28 62169 126684 32.92 188853 29 60226 128671 31.88 188897 30 58700 126945 31.62 185645 31 59804 124429 32.46 184233 32 58688 121544 32.56 180232 33 58949 121983 32.58 180932 34 60745 122627 33.13 183372 35 59161 120982 32.84 180143 36 58613 121910 32.47 180523 37 56667 118277 32.39 174944 38 55378 117859 31.97 173237 39 57512 120773 32.26 178285 40 57176 118737 32.50 175913 41 56521 118569 32.28 175090 42 57498 120655 32.27 178153 43 56124 116913 32.43 173037 44 56365 115925 32.72 172290 45 56738 115817 32.88 172555 46 56894 116499 32.81 173393 47 56101 112669 33.24 168770 48 55120 113237 32.74 168357 49 56572 113965 33.17 170537 50 54641 114058 32.39 168699 51 54895 113728 32.55 168623 52 54642 117704 31.70 172346 53 53696 111427 32.52 165123 54 51875 110058 32.03 161933 55 51866 106169 32.82 158035 56 51065 106094 32.49 157159 57 51665 106050 32.76 157715 58 51679 106439 32.68 158118 59 51098 105046 32.72 156144 60 49862 104670 32.27 154532 61 49883 103194 32.59 153077 62 48721 103191 32.07 151912 63 48343 102535 32.04 150878 64 47391 102040 31.71 149431 65 48134 99821 32.53 147955 66 49213 100182 32.94 149395 67 47072 97849 32.48 144921 68 46814 97349 32.47 144163 69 46459 96614 32.47 143073 70 45850 95848 32.36 141698 71 44464 93754 32.17 138218 72 44083 92802 32.20 136885 73 43519 90559 32.46 134078 74 43174 90409 32.32 133583 75 41871 90181 31.71 132052 76 42007 88872 32.10 130879 77 42884 88028 32.76 130912 78 42433 88365 32.44 130798 79 41234 86848 32.19 128082 80 40802 86505 32.05 127307 81 39922 85241 31.90 125163 82 39187 83835 31.85 123022 83 39946 84188 32.18 124134 84 39337 84589 31.74 123926 85 38947 83284 31.86 122231 86 37940 80685 31.98 118625 87 36673 81000 31.17 117673 88 37007 79921 31.65 116928 89 36178 79477 31.28 115655 90 35808 78598 31.30 114406 91 35737 77058 31.68 112795 92 35099 76576 31.43 111675 93 34750 76697 31.18 111447 94 34965 75796 31.57 110761 95 34408 74632 31.56 109040 96 34539 75904 31.27 110443 97 33287 72735 31.40 106022 98 31084 67800 31.43 98884 99 24721 53083 31.77 77804 100 32101 67587 32.20 99688 101 30210 65990 31.40 96200 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 206012 278330 42.53 484342 2 119944 259712 31.59 379656 3 47369 254185 15.71 301554 4 23779 258491 8.42 282270 5 14680 237790 5.81 252470 6 13053 227129 5.43 240182 7 10051 282027 3.44 292078 8 4558 306458 1.47 311016 9 3951 290368 1.34 294319 10 3908 279047 1.38 282955 11 3983 282457 1.39 286440 12 3946 282170 1.38 286116 13 3479 272720 1.26 276199 14 3145 271701 1.14 274846 15 3019 278583 1.07 281602 16 2823 279423 1.00 282246 17 2813 277960 1.00 280773 18 2670 275679 0.96 278349 19 2745 275039 0.99 277784 20 2852 289302 0.98 292154 21 2920 293662 0.98 296582 22 2986 290057 1.02 293043 23 3043 294537 1.02 297580 24 2982 294627 1.00 297609 25 2924 285576 1.01 288500 26 3379 289961 1.15 293340 27 3067 292390 1.04 295457 28 3025 290094 1.03 293119 29 3285 291576 1.11 294861 30 3067 294884 1.03 297951 31 3134 285981 1.08 289115 32 3041 287870 1.05 290911 33 3148 290053 1.07 293201 34 3256 283770 1.13 287026 35 3506 284085 1.22 287591 36 3281 284773 1.14 288054 37 3199 276358 1.14 279557 38 3401 280419 1.20 283820 39 3334 278114 1.18 281448 40 3165 276520 1.13 279685 41 3167 276009 1.13 279176 42 3105 274933 1.12 278038 43 3162 269902 1.16 273064 44 3208 272967 1.16 276175 45 3252 271313 1.18 274565 46 3260 268496 1.20 271756 47 3607 266155 1.34 269762 48 3181 270713 1.16 273894 49 3221 263976 1.21 267197 50 3747 261112 1.41 264859 51 3355 264043 1.25 267398 52 3266 262076 1.23 265342 53 3325 257369 1.28 260694 54 3326 260161 1.26 263487 55 3197 254770 1.24 257967 56 3222 256999 1.24 260221 57 3744 253472 1.46 257216 58 3206 250407 1.26 253613 59 3195 250977 1.26 254172 60 3168 249497 1.25 252665 61 3277 247058 1.31 250335 62 3361 246691 1.34 250052 63 3263 243878 1.32 247141 64 3317 243410 1.34 246727 65 3564 242857 1.45 246421 66 3212 237236 1.34 240448 67 3156 230302 1.35 233458 68 3384 231160 1.44 234544 69 3067 229360 1.32 232427 70 3067 223919 1.35 226986 71 3014 223662 1.33 226676 72 3037 221466 1.35 224503 73 2975 218560 1.34 221535 74 3075 216886 1.40 219961 75 2916 217158 1.33 220074 76 2791 210705 1.31 213496 77 2974 210651 1.39 213625 78 2910 207229 1.38 210139 79 2778 202410 1.35 205188 80 2754 201256 1.35 204010 81 2985 198468 1.48 201453 82 2822 195102 1.43 197924 83 2915 199524 1.44 202439 84 2684 197819 1.34 200503 85 2732 194766 1.38 197498 86 2742 195517 1.38 198259 87 2736 195296 1.38 198032 88 2972 190889 1.53 193861 89 2696 188659 1.41 191355 90 2549 187391 1.34 189940 91 2702 184506 1.44 187208 92 2743 186548 1.45 189291 93 2846 183099 1.53 185945 94 2783 179841 1.52 182624 95 2736 177618 1.52 180354 96 2657 175738 1.49 178395 97 2619 160895 1.60 163514 98 2384 146394 1.60 148778 99 1692 95234 1.75 96926 100 1860 96247 1.90 98107 101 3823 157844 2.36 161667 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 223354 368067 37.77 591421 2 108575 388878 21.83 497453 3 51494 458228 10.10 509722 4 42226 484790 8.01 527016 5 38993 569216 6.41 608209 6 31753 619748 4.87 651501 7 28021 785032 3.45 813053 8 17633 849816 2.03 867449 9 13536 786833 1.69 800369 10 13624 769299 1.74 782923 11 15141 772699 1.92 787840 12 12907 783525 1.62 796432 13 14342 798455 1.76 812797 14 15552 819025 1.86 834577 15 13396 842099 1.57 855495 16 13070 854600 1.51 867670 17 15124 859166 1.73 874290 18 13278 892655 1.47 905933 19 13332 909951 1.44 923283 20 15121 939850 1.58 954971 21 13274 941023 1.39 954297 22 14626 940604 1.53 955230 23 15505 941157 1.62 956662 24 13515 939790 1.42 953305 25 14596 941514 1.53 956110 26 15891 949177 1.65 965068 27 14009 951398 1.45 965407 28 13846 950191 1.44 964037 29 15666 945385 1.63 961051 30 13546 932959 1.43 946505 31 14339 919660 1.54 933999 32 14975 918828 1.60 933803 33 13276 915323 1.43 928599 34 15090 919834 1.61 934924 35 15730 908927 1.70 924657 36 13795 913604 1.49 927399 37 13268 904436 1.45 917704 38 15404 903526 1.68 918930 39 13650 890425 1.51 904075 40 13542 886997 1.50 900539 41 15364 889182 1.70 904546 42 13983 893722 1.54 907705 43 14564 880198 1.63 894762 44 15245 883919 1.70 899164 45 13797 869942 1.56 883739 46 13837 868593 1.57 882430 47 15529 857337 1.78 872866 48 12680 855690 1.46 868370 49 13514 842743 1.58 856257 50 15574 830342 1.84 845916 51 12882 823386 1.54 836268 52 13365 814030 1.62 827395 53 14853 806381 1.81 821234 54 13050 806263 1.59 819313 55 13083 801947 1.61 815030 56 14432 796515 1.78 810947 57 13845 798331 1.70 812176 58 12969 795023 1.61 807992 59 14429 797342 1.78 811771 60 12102 783432 1.52 795534 61 12960 777504 1.64 790464 62 13580 765280 1.74 778860 63 12114 760644 1.57 772758 64 13128 753275 1.71 766403 65 13519 747194 1.78 760713 66 11868 738808 1.58 750676 67 12023 731219 1.62 743242 68 13155 726674 1.78 739829 69 11137 721647 1.52 732784 70 11621 717236 1.59 728857 71 12724 710737 1.76 723461 72 11318 705982 1.58 717300 73 12115 693682 1.72 705797 74 12616 692264 1.79 704880 75 11084 686497 1.59 697581 76 11140 681871 1.61 693011 77 12748 674294 1.86 687042 78 10588 668268 1.56 678856 79 10691 664101 1.58 674792 80 12169 656475 1.82 668644 81 11187 644683 1.71 655870 82 11482 641027 1.76 652509 83 12193 641039 1.87 653232 84 10596 630226 1.65 640822 85 10667 621542 1.69 632209 86 11444 613696 1.83 625140 87 10037 610036 1.62 620073 88 11182 600995 1.83 612177 89 11200 598001 1.84 609201 90 9710 592993 1.61 602703 91 10439 584801 1.75 595240 92 10739 583832 1.81 594571 93 9708 575613 1.66 585321 94 9834 567152 1.70 576986 95 10741 560185 1.88 570926 96 9317 548432 1.67 557749 97 9003 532779 1.66 541782 98 9591 493557 1.91 503148 99 5964 341394 1.72 347358 100 6759 305638 2.16 312397 101 10038 490829 2.00 500867 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 117691 105911 52.63 223602 2 98011 84649 53.66 182660 3 104511 95301 52.30 199812 4 94376 104170 47.53 198546 5 42887 131805 24.55 174692 6 26887 74475 26.53 101362 7 23024 77007 23.02 100031 8 23831 70065 25.38 93896 9 20900 60822 25.57 81722 10 22567 66920 25.22 89487 11 24299 65714 26.99 90013 12 23298 62911 27.03 86209 13 23515 60999 27.82 84514 14 24968 62119 28.67 87087 15 24426 57446 29.83 81872 16 22647 54469 29.37 77116 17 26796 60211 30.80 87007 18 26384 58266 31.17 84650 19 25377 56535 30.98 81912 20 23056 53221 30.23 76277 21 24451 51816 32.06 76267 22 24334 53516 31.26 77850 23 23129 51608 30.95 74737 24 21139 48362 30.42 69501 25 24099 52285 31.55 76384 26 21876 49256 30.75 71132 27 22931 49563 31.63 72494 28 21550 47427 31.24 68977 29 22560 49238 31.42 71798 30 21191 45419 31.81 66610 31 20752 46156 31.02 66908 32 20023 44473 31.05 64496 33 23411 45201 34.12 68612 34 21309 47333 31.04 68642 35 26575 52213 33.73 78788 36 21876 44764 32.83 66640 37 22410 46182 32.67 68592 38 19800 42916 31.57 62716 39 20599 43797 31.99 64396 40 22546 43872 33.95 66418 41 19781 42053 31.99 61834 42 19924 43334 31.50 63258 43 19725 42349 31.78 62074 44 18686 41049 31.28 59735 45 23892 47140 33.64 71032 46 17844 38454 31.70 56298 47 18220 38635 32.05 56855 48 18447 38998 32.11 57445 49 17580 39157 30.99 56737 50 17030 37749 31.09 54779 51 16989 36448 31.79 53437 52 16994 37006 31.47 54000 53 17521 36130 32.66 53651 54 17232 36743 31.93 53975 55 17602 36439 32.57 54041 56 16107 35183 31.40 51290 57 16983 35960 32.08 52943 58 16434 35550 31.61 51984 59 15476 33300 31.73 48776 60 16325 34506 32.12 50831 61 14158 32410 30.40 46568 62 14876 31832 31.85 46708 63 16119 32614 33.08 48733 64 14787 31692 31.81 46479 65 14317 30400 32.02 44717 66 15535 31516 33.02 47051 67 14006 31922 30.50 45928 68 15824 33705 31.95 49529 69 14101 29082 32.65 43183 70 13360 29689 31.03 43049 71 14257 28395 33.43 42652 72 13111 28209 31.73 41320 73 13582 28367 32.38 41949 74 11836 26811 30.63 38647 75 12031 26480 31.24 38511 76 12444 26234 32.17 38678 77 12102 26408 31.43 38510 78 12100 26137 31.64 38237 79 11528 25967 30.75 37495 80 11604 25718 31.09 37322 81 11377 25313 31.01 36690 82 11370 25376 30.94 36746 83 11531 24607 31.91 36138 84 13004 26817 32.66 39821 85 10717 24258 30.64 34975 86 10902 24129 31.12 35031 87 10643 23234 31.42 33877 88 10813 23416 31.59 34229 89 11206 23693 32.11 34899 90 11392 23581 32.57 34973 91 10295 22693 31.21 32988 92 10010 21882 31.39 31892 93 10135 21665 31.87 31800 94 10526 22088 32.27 32614 95 10307 21792 32.11 32099 96 9943 21615 31.51 31558 97 11060 23204 32.28 34264 98 9731 19826 32.92 29557 99 8419 0 100.00 8419 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 26642 135260 16.46 161902 2 25013 132086 15.92 157099 3 22846 131120 14.84 153966 4 25213 144743 14.84 169956 5 3023 263608 1.13 266631 6 2286 324610 0.70 326896 7 1408 183355 0.76 184763 8 1427 193567 0.73 194994 9 1219 157710 0.77 158929 10 1362 151676 0.89 153038 11 1826 214452 0.84 216278 12 1375 164811 0.83 166186 13 1278 162326 0.78 163604 14 1293 152153 0.84 153446 15 1310 147866 0.88 149176 16 1175 138793 0.84 139968 17 1311 148681 0.87 149992 18 1466 130779 1.11 132245 19 1240 126855 0.97 128095 20 1105 125973 0.87 127078 21 1380 120262 1.13 121642 22 1231 132006 0.92 133237 23 1250 132913 0.93 134163 24 1019 117418 0.86 118437 25 1114 119538 0.92 120652 26 1216 125214 0.96 126430 27 1126 116843 0.95 117969 28 1014 111631 0.90 112645 29 1057 121398 0.86 122455 30 1028 116045 0.88 117073 31 980 108683 0.89 109663 32 987 111461 0.88 112448 33 1202 137820 0.86 139022 34 944 108920 0.86 109864 35 1026 115187 0.88 116213 36 971 116483 0.83 117454 37 857 103815 0.82 104672 38 979 111342 0.87 112321 39 908 101231 0.89 102139 40 902 102144 0.88 103046 41 866 98908 0.87 99774 42 903 94627 0.95 95530 43 803 96400 0.83 97203 44 862 95596 0.89 96458 45 885 89883 0.98 90768 46 834 90577 0.91 91411 47 903 93034 0.96 93937 48 840 89054 0.93 89894 49 883 93166 0.94 94049 50 835 88747 0.93 89582 51 761 84625 0.89 85386 52 804 83070 0.96 83874 53 816 94047 0.86 94863 54 786 85550 0.91 86336 55 772 83282 0.92 84054 56 878 83893 1.04 84771 57 830 80336 1.02 81166 58 683 78108 0.87 78791 59 727 81639 0.88 82366 60 829 79327 1.03 80156 61 754 78403 0.95 79157 62 779 80176 0.96 80955 63 723 79212 0.90 79935 64 621 74007 0.83 74628 65 708 77511 0.91 78219 66 656 71766 0.91 72422 67 702 78020 0.89 78722 68 614 74130 0.82 74744 69 618 73942 0.83 74560 70 677 73574 0.91 74251 71 640 74969 0.85 75609 72 652 69080 0.94 69732 73 590 68243 0.86 68833 74 635 70322 0.89 70957 75 596 67782 0.87 68378 76 552 65239 0.84 65791 77 560 68819 0.81 69379 78 548 64003 0.85 64551 79 547 64363 0.84 64910 80 580 62447 0.92 63027 81 543 61581 0.87 62124 82 534 59671 0.89 60205 83 569 60552 0.93 61121 84 516 58740 0.87 59256 85 598 65658 0.90 66256 86 514 58749 0.87 59263 87 474 57876 0.81 58350 88 462 55472 0.83 55934 89 542 58231 0.92 58773 90 587 57068 1.02 57655 91 512 60113 0.84 60625 92 527 55811 0.94 56338 93 496 53984 0.91 54480 94 536 53376 0.99 53912 95 551 54981 0.99 55532 96 503 51608 0.97 52111 97 541 50482 1.06 51023 98 451 50526 0.88 50977 99 315 0 100.00 315 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32872 162740 16.80 195612 2 26401 127205 17.19 153606 3 27060 134659 16.73 161719 4 26197 133784 16.38 159981 5 5812 283375 2.01 289187 6 5950 385530 1.52 391480 7 6528 533801 1.21 540329 8 6840 521272 1.30 528112 9 6892 488675 1.39 495567 10 6823 504704 1.33 511527 11 6892 496187 1.37 503079 12 6625 465694 1.40 472319 13 6589 483963 1.34 490552 14 6344 484088 1.29 490432 15 6350 502009 1.25 508359 16 6172 483621 1.26 489793 17 6341 479308 1.31 485649 18 6354 473694 1.32 480048 19 5641 438080 1.27 443721 20 6064 468909 1.28 474973 21 5946 444679 1.32 450625 22 5992 422271 1.40 428263 23 5392 417632 1.27 423024 24 5295 403079 1.30 408374 25 5859 399269 1.45 405128 26 5673 400497 1.40 406170 27 6002 434057 1.36 440059 28 5386 404191 1.32 409577 29 5265 395120 1.31 400385 30 5504 383384 1.42 388888 31 5121 378214 1.34 383335 32 4912 367430 1.32 372342 33 5135 364482 1.39 369617 34 5322 361434 1.45 366756 35 5669 375842 1.49 381511 36 4945 369347 1.32 374292 37 4801 367223 1.29 372024 38 5040 390955 1.27 395995 39 4998 348780 1.41 353778 40 4787 372667 1.27 377454 41 4699 345494 1.34 350193 42 4753 359020 1.31 363773 43 4747 337915 1.39 342662 44 4447 332105 1.32 336552 45 4677 334170 1.38 338847 46 4633 341033 1.34 345666 47 4477 330233 1.34 334710 48 4498 321924 1.38 326422 49 4487 334684 1.32 339171 50 4339 325818 1.31 330157 51 4289 317874 1.33 322163 52 4167 300918 1.37 305085 53 3935 299438 1.30 303373 54 3824 293385 1.29 297209 55 4056 306112 1.31 310168 56 4145 290127 1.41 294272 57 3836 307524 1.23 311360 58 3676 291361 1.25 295037 59 3648 277745 1.30 281393 60 3879 290563 1.32 294442 61 3575 277258 1.27 280833 62 3453 272303 1.25 275756 63 3593 275048 1.29 278641 64 3494 263853 1.31 267347 65 3302 270282 1.21 273584 66 3367 257035 1.29 260402 67 3186 259761 1.21 262947 68 3422 271517 1.24 274939 69 3390 260733 1.28 264123 70 3235 247329 1.29 250564 71 3288 245999 1.32 249287 72 3102 245437 1.25 248539 73 3237 243150 1.31 246387 74 2997 245492 1.21 248489 75 2989 241646 1.22 244635 76 3044 229924 1.31 232968 77 2950 230766 1.26 233716 78 3077 232814 1.30 235891 79 2955 236554 1.23 239509 80 2895 226840 1.26 229735 81 3062 227012 1.33 230074 82 2961 223357 1.31 226318 83 2893 221853 1.29 224746 84 2959 218634 1.34 221593 85 2783 216740 1.27 219523 86 2668 215172 1.22 217840 87 2784 213536 1.29 216320 88 2541 205330 1.22 207871 89 2665 204747 1.28 207412 90 2673 203924 1.29 206597 91 2587 203310 1.26 205897 92 2473 200149 1.22 202622 93 2432 197472 1.22 199904 94 2461 196188 1.24 198649 95 2359 193696 1.20 196055 96 2240 188509 1.17 190749 97 2213 187766 1.16 189979 98 2021 177808 1.12 179829 99 1464 0 100.00 1464