CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 116798 159027 42.34 275825 2 111610 180977 38.15 292587 3 111517 169680 39.66 281197 4 116324 148795 43.88 265119 5 114957 130657 46.80 245614 6 117250 105643 52.60 222893 7 130715 102423 56.07 233138 8 62741 117903 34.73 180644 9 55555 111266 33.30 166821 10 55199 108393 33.74 163592 11 57296 111061 34.03 168357 12 55913 111976 33.30 167889 13 54845 113520 32.58 168365 14 52470 114168 31.49 166638 15 52114 116065 30.99 168179 16 48968 115680 29.74 164648 17 46642 112972 29.22 159614 18 47720 115366 29.26 163086 19 46677 115580 28.77 162257 20 47376 117605 28.72 164981 21 47878 117884 28.88 165762 22 47263 116023 28.94 163286 23 46454 115662 28.65 162116 24 45873 116346 28.28 162219 25 45759 114761 28.51 160520 26 45696 113931 28.63 159627 27 45194 117412 27.79 162606 28 46327 116084 28.52 162411 29 45320 115297 28.22 160617 30 45151 115644 28.08 160795 31 45599 113107 28.73 158706 32 44488 112021 28.43 156509 33 45073 112573 28.59 157646 34 45646 111790 28.99 157436 35 45085 111960 28.71 157045 36 44586 113010 28.29 157596 37 43564 110450 28.29 154014 38 42952 109365 28.20 152317 39 44444 111201 28.55 155645 40 43424 109201 28.45 152625 41 43694 109345 28.55 153039 42 44613 111305 28.61 155918 43 43842 108132 28.85 151974 44 42975 107804 28.50 150779 45 43604 107156 28.92 150760 46 43411 108278 28.62 151689 47 42639 105393 28.80 148032 48 42019 105270 28.53 147289 49 43541 105353 29.24 148894 50 41941 106023 28.35 147964 51 42588 104496 28.95 147084 52 42623 106595 28.56 149218 53 41009 101620 28.75 142629 54 40357 100552 28.64 140909 55 40203 98728 28.94 138931 56 39582 97285 28.92 136867 57 39691 98464 28.73 138155 58 39588 97701 28.84 137289 59 39655 96633 29.10 136288 60 38214 96197 28.43 134411 61 38662 94757 28.98 133419 62 37616 94764 28.42 132380 63 37210 93782 28.41 130992 64 36816 92626 28.44 129442 65 36900 91981 28.63 128881 66 36824 91384 28.72 128208 67 36663 90410 28.85 127073 68 35606 89576 28.44 125182 69 35645 88965 28.61 124610 70 34814 87433 28.48 122247 71 34051 85484 28.49 119535 72 33297 85343 28.07 118640 73 33149 84035 28.29 117184 74 32627 82892 28.24 115519 75 31738 83201 27.61 114939 76 31838 81137 28.18 112975 77 32121 80446 28.54 112567 78 31850 81029 28.22 112879 79 31499 79664 28.34 111163 80 30712 79046 27.98 109758 81 29917 78468 27.60 108385 82 29012 76796 27.42 105808 83 30090 77022 28.09 107112 84 29470 76048 27.93 105518 85 29307 75068 28.08 104375 86 28558 73666 27.94 102224 87 27646 72826 27.52 100472 88 27539 73440 27.27 100979 89 27073 71405 27.49 98478 90 26759 71061 27.36 97820 91 26422 69705 27.49 96127 92 26011 69403 27.26 95414 93 25902 69347 27.19 95249 94 25791 68676 27.30 94467 95 25350 67409 27.33 92759 96 25427 67223 27.44 92650 97 24486 64754 27.44 89240 98 23510 61258 27.73 84768 99 18129 47331 27.69 65460 100 24025 60803 28.32 84828 101 22755 60967 27.18 83722 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 138193 240300 36.51 378493 2 76644 236670 24.46 313314 3 32561 231858 12.31 264419 4 17577 224247 7.27 241824 5 11611 201889 5.44 213500 6 10127 186339 5.15 196466 7 7043 232297 2.94 239340 8 3101 254599 1.20 257700 9 2623 242771 1.07 245394 10 2628 235558 1.10 238186 11 2763 236716 1.15 239479 12 2678 234181 1.13 236859 13 2408 227696 1.05 230104 14 2264 228030 0.98 230294 15 2301 232464 0.98 234765 16 2015 233557 0.86 235572 17 1918 232053 0.82 233971 18 1965 230932 0.84 232897 19 1887 231584 0.81 233471 20 1912 242013 0.78 243925 21 1890 243293 0.77 245183 22 2024 240579 0.83 242603 23 2118 244407 0.86 246525 24 2029 246700 0.82 248729 25 2042 240030 0.84 242072 26 2343 241758 0.96 244101 27 1996 245188 0.81 247184 28 2043 243302 0.83 245345 29 2346 245630 0.95 247976 30 2130 246787 0.86 248917 31 2151 239495 0.89 241646 32 2208 244544 0.89 246752 33 2253 243836 0.92 246089 34 2252 240018 0.93 242270 35 2462 240176 1.01 242638 36 2300 241170 0.94 243470 37 2317 234254 0.98 236571 38 2450 238650 1.02 241100 39 2354 235537 0.99 237891 40 2311 235963 0.97 238274 41 2274 234549 0.96 236823 42 2390 233688 1.01 236078 43 2283 228168 0.99 230451 44 2443 232258 1.04 234701 45 2489 230405 1.07 232894 46 2517 227601 1.09 230118 47 2614 226944 1.14 229558 48 2448 231698 1.05 234146 49 2558 224822 1.12 227380 50 2591 223348 1.15 225939 51 2531 225475 1.11 228006 52 2626 223446 1.16 226072 53 2561 218123 1.16 220684 54 2613 220006 1.17 222619 55 2569 215755 1.18 218324 56 2468 216281 1.13 218749 57 2496 214655 1.15 217151 58 2630 211927 1.23 214557 59 2643 211341 1.24 213984 60 2453 210420 1.15 212873 61 2588 207499 1.23 210087 62 2700 206877 1.29 209577 63 2639 204663 1.27 207302 64 2400 204118 1.16 206518 65 2724 202234 1.33 204958 66 2483 198546 1.24 201029 67 2439 192742 1.25 195181 68 2592 193136 1.32 195728 69 2424 191212 1.25 193636 70 2393 187109 1.26 189502 71 2300 186329 1.22 188629 72 2339 185626 1.24 187965 73 2358 183282 1.27 185640 74 2512 181860 1.36 184372 75 2242 180398 1.23 182640 76 2309 174555 1.31 176864 77 2442 174787 1.38 177229 78 2303 171679 1.32 173982 79 2244 169084 1.31 171328 80 2234 167910 1.31 170144 81 2120 166211 1.26 168331 82 2220 162970 1.34 165190 83 2318 164650 1.39 166968 84 2137 164655 1.28 166792 85 2068 161117 1.27 163185 86 2186 160231 1.35 162417 87 2101 160984 1.29 163085 88 2088 157424 1.31 159512 89 2081 155438 1.32 157519 90 2050 154501 1.31 156551 91 2090 152442 1.35 154532 92 2165 152985 1.40 155150 93 2135 150333 1.40 152468 94 2111 147511 1.41 149622 95 2049 145284 1.39 147333 96 2049 144102 1.40 146151 97 2001 131487 1.50 133488 98 1787 120697 1.46 122484 99 1175 78274 1.48 79449 100 1364 78717 1.70 80081 101 3024 132100 2.24 135124 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 178234 330081 35.06 508315 2 86121 356710 19.45 442831 3 42892 401409 9.65 444301 4 35311 424444 7.68 459755 5 33552 503189 6.25 536741 6 27027 545617 4.72 572644 7 21218 691758 2.98 712976 8 14118 751586 1.84 765704 9 10558 693207 1.50 703765 10 10240 667496 1.51 677736 11 12415 668522 1.82 680937 12 10523 672644 1.54 683167 13 11454 683260 1.65 694714 14 12809 699873 1.80 712682 15 10916 715311 1.50 726227 16 10474 723393 1.43 733867 17 12295 729673 1.66 741968 18 10420 754852 1.36 765272 19 10289 770917 1.32 781206 20 12280 791096 1.53 803376 21 10551 792277 1.31 802828 22 11193 795363 1.39 806556 23 12719 793557 1.58 806276 24 10606 792715 1.32 803321 25 11207 794800 1.39 806007 26 12642 799539 1.56 812181 27 10904 802108 1.34 813012 28 10706 804220 1.31 814926 29 12644 800174 1.56 812818 30 10764 793038 1.34 803802 31 10895 784571 1.37 795466 32 12172 781466 1.53 793638 33 10631 781272 1.34 791903 34 11657 782597 1.47 794254 35 12399 774387 1.58 786786 36 10735 780121 1.36 790856 37 10315 770119 1.32 780434 38 12174 768794 1.56 780968 39 10268 760312 1.33 770580 40 10630 757008 1.38 767638 41 12160 758869 1.58 771029 42 10771 758943 1.40 769714 43 11153 748534 1.47 759687 44 11923 750902 1.56 762825 45 10620 740159 1.41 750779 46 10432 739601 1.39 750033 47 11973 733857 1.61 745830 48 10137 729145 1.37 739282 49 10418 719936 1.43 730354 50 11437 715380 1.57 726817 51 9892 703067 1.39 712959 52 10459 697643 1.48 708102 53 11423 689729 1.63 701152 54 10138 687095 1.45 697233 55 10283 680990 1.49 691273 56 11430 676193 1.66 687623 57 9950 679346 1.44 689296 58 9997 673101 1.46 683098 59 11594 674812 1.69 686406 60 9565 663191 1.42 672756 61 10022 657230 1.50 667252 62 10960 647756 1.66 658716 63 9628 640567 1.48 650195 64 10142 634314 1.57 644456 65 10934 629736 1.71 640670 66 9305 625763 1.47 635068 67 9458 617838 1.51 627296 68 10429 612837 1.67 623266 69 8880 607146 1.44 616026 70 8896 600782 1.46 609678 71 10261 596531 1.69 606792 72 8712 592954 1.45 601666 73 9408 581549 1.59 590957 74 9837 579112 1.67 588949 75 8613 573948 1.48 582561 76 8655 570784 1.49 579439 77 10099 563852 1.76 573951 78 8210 559720 1.45 567930 79 8368 555878 1.48 564246 80 9434 549389 1.69 558823 81 8278 540758 1.51 549036 82 8729 533786 1.61 542515 83 9625 532471 1.78 542096 84 8178 524153 1.54 532331 85 8104 517278 1.54 525382 86 8898 511127 1.71 520025 87 7839 507233 1.52 515072 88 7705 502140 1.51 509845 89 8895 495263 1.76 504158 90 7596 492589 1.52 500185 91 7647 484261 1.55 491908 92 8422 481314 1.72 489736 93 7532 476491 1.56 484023 94 7576 469998 1.59 477574 95 8506 462995 1.80 471501 96 7164 454692 1.55 461856 97 7136 441875 1.59 449011 98 7545 411467 1.80 419012 99 4572 281947 1.60 286519 100 5189 248850 2.04 254039 101 8160 417302 1.92 425462 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 82246 88445 48.18 170691 2 70731 73391 49.08 144122 3 77290 83755 47.99 161045 4 70458 92786 43.16 163244 5 30758 119134 20.52 149892 6 18643 64816 22.34 83459 7 16209 67171 19.44 83380 8 16923 61624 21.55 78547 9 14909 54946 21.34 69855 10 15973 60312 20.94 76285 11 17273 58438 22.81 75711 12 16524 55540 22.93 72064 13 17225 54594 23.98 71819 14 17997 55555 24.47 73552 15 17786 51521 25.66 69307 16 16297 48948 24.98 65245 17 19513 53051 26.89 72564 18 18842 52389 26.45 71231 19 17996 50518 26.27 68514 20 16935 48588 25.85 65523 21 17531 46704 27.29 64235 22 17433 47675 26.78 65108 23 16620 46482 26.34 63102 24 15274 43547 25.97 58821 25 17101 47094 26.64 64195 26 15681 43581 26.46 59262 27 16559 44388 27.17 60947 28 15510 42316 26.82 57826 29 16062 44101 26.70 60163 30 15423 41414 27.14 56837 31 14751 41180 26.37 55931 32 14278 39108 26.74 53386 33 16144 40153 28.68 56297 34 15344 41735 26.88 57079 35 18058 44808 28.72 62866 36 15307 39821 27.77 55128 37 15932 40543 28.21 56475 38 14021 38847 26.52 52868 39 14678 38674 27.51 53352 40 15882 38273 29.33 54155 41 14067 37626 27.21 51693 42 14286 38591 27.02 52877 43 14067 37380 27.34 51447 44 13080 36330 26.47 49410 45 16321 39970 28.99 56291 46 12808 33702 27.54 46510 47 13196 34552 27.64 47748 48 13219 34324 27.80 47543 49 12638 34850 26.61 47488 50 12007 33168 26.58 45175 51 12066 32283 27.21 44349 52 12215 32235 27.48 44450 53 12231 31815 27.77 44046 54 12257 32166 27.59 44423 55 12179 32072 27.52 44251 56 11435 31174 26.84 42609 57 11903 31800 27.24 43703 58 11287 30925 26.74 42212 59 11182 29028 27.81 40210 60 11468 29634 27.90 41102 61 10081 28372 26.22 38453 62 10561 28243 27.22 38804 63 11257 28270 28.48 39527 64 10192 27567 26.99 37759 65 10021 26269 27.61 36290 66 10601 27289 27.98 37890 67 9908 27852 26.24 37760 68 10673 28639 27.15 39312 69 9842 25615 27.76 35457 70 9348 25787 26.61 35135 71 9441 24279 28.00 33720 72 8867 24048 26.94 32915 73 9278 24611 27.38 33889 74 8197 23355 25.98 31552 75 8620 23264 27.04 31884 76 8664 22404 27.89 31068 77 8455 22815 27.04 31270 78 8448 22633 27.18 31081 79 7814 22647 25.65 30461 80 7799 22282 25.93 30081 81 7773 21685 26.39 29458 82 7930 21751 26.72 29681 83 7966 21313 27.21 29279 84 8806 22978 27.71 31784 85 7591 21110 26.45 28701 86 7488 20824 26.45 28312 87 7678 19944 27.80 27622 88 7386 19910 27.06 27296 89 7817 20850 27.27 28667 90 7763 20243 27.72 28006 91 7157 19672 26.68 26829 92 6879 18941 26.64 25820 93 7105 19080 27.13 26185 94 7154 19363 26.98 26517 95 7204 18895 27.60 26099 96 6939 18831 26.93 25770 97 7455 19853 27.30 27308 98 6599 17588 27.28 24187 99 6143 0 100.00 6143 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21708 109585 16.53 131293 2 21691 111848 16.24 133539 3 20338 111966 15.37 132304 4 21965 119142 15.57 141107 5 2009 220364 0.90 222373 6 1491 265385 0.56 266876 7 908 146489 0.62 147397 8 935 153652 0.60 154587 9 783 128614 0.61 129397 10 801 123159 0.65 123960 11 1166 165270 0.70 166436 12 869 131338 0.66 132207 13 867 128866 0.67 129733 14 796 124528 0.64 125324 15 871 119404 0.72 120275 16 789 111175 0.70 111964 17 912 118749 0.76 119661 18 926 105224 0.87 106150 19 829 103625 0.79 104454 20 743 101686 0.73 102429 21 924 97592 0.94 98516 22 849 105106 0.80 105955 23 830 105392 0.78 106222 24 713 94648 0.75 95361 25 701 95334 0.73 96035 26 779 100451 0.77 101230 27 730 94197 0.77 94927 28 651 89826 0.72 90477 29 728 95094 0.76 95822 30 684 93114 0.73 93798 31 597 88605 0.67 89202 32 626 89258 0.70 89884 33 740 104992 0.70 105732 34 608 87886 0.69 88494 35 650 90848 0.71 91498 36 595 91662 0.64 92257 37 585 83095 0.70 83680 38 639 87442 0.73 88081 39 640 81636 0.78 82276 40 601 81546 0.73 82147 41 590 78419 0.75 79009 42 599 74834 0.79 75433 43 628 76944 0.81 77572 44 606 76419 0.79 77025 45 530 72102 0.73 72632 46 520 71962 0.72 72482 47 584 73505 0.79 74089 48 611 71621 0.85 72232 49 525 73998 0.70 74523 50 566 70656 0.79 71222 51 508 67620 0.75 68128 52 554 66022 0.83 66576 53 594 72907 0.81 73501 54 533 67732 0.78 68265 55 525 66690 0.78 67215 56 515 66833 0.76 67348 57 526 63432 0.82 63958 58 478 62541 0.76 63019 59 415 63468 0.65 63883 60 545 62601 0.86 63146 61 505 61656 0.81 62161 62 471 63505 0.74 63976 63 517 62177 0.82 62694 64 453 58678 0.77 59131 65 453 59490 0.76 59943 66 455 56512 0.80 56967 67 509 60188 0.84 60697 68 457 58659 0.77 59116 69 443 57938 0.76 58381 70 417 57233 0.72 57650 71 396 58468 0.67 58864 72 400 54132 0.73 54532 73 361 53386 0.67 53747 74 379 54688 0.69 55067 75 368 52414 0.70 52782 76 371 50699 0.73 51070 77 412 53252 0.77 53664 78 367 49981 0.73 50348 79 360 50177 0.71 50537 80 336 48755 0.68 49091 81 346 47516 0.72 47862 82 348 46580 0.74 46928 83 342 47286 0.72 47628 84 326 45871 0.71 46197 85 359 50295 0.71 50654 86 328 45957 0.71 46285 87 333 45679 0.72 46012 88 286 43506 0.65 43792 89 344 45119 0.76 45463 90 375 44858 0.83 45233 91 284 46471 0.61 46755 92 342 43872 0.77 44214 93 305 41852 0.72 42157 94 304 41456 0.73 41760 95 336 42947 0.78 43283 96 378 40334 0.93 40712 97 300 39937 0.75 40237 98 262 39870 0.65 40132 99 218 0 100.00 218 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29932 145867 17.03 175799 2 24352 119133 16.97 143485 3 24837 122210 16.89 147047 4 23878 118715 16.75 142593 5 4570 239812 1.87 244382 6 4413 324580 1.34 328993 7 4840 444094 1.08 448934 8 5079 437175 1.15 442254 9 5309 411058 1.28 416367 10 4957 422038 1.16 426995 11 5045 414225 1.20 419270 12 4934 384917 1.27 389851 13 4627 397371 1.15 401998 14 4702 398158 1.17 402860 15 4716 406746 1.15 411462 16 4334 390379 1.10 394713 17 4492 386735 1.15 391227 18 4628 384675 1.19 389303 19 4204 359560 1.16 363764 20 4450 377282 1.17 381732 21 4422 358681 1.22 363103 22 4144 344212 1.19 348356 23 4083 339547 1.19 343630 24 3958 326259 1.20 330217 25 4049 325413 1.23 329462 26 4033 323099 1.23 327132 27 4202 346702 1.20 350904 28 3884 327496 1.17 331380 29 3889 319731 1.20 323620 30 4004 311514 1.27 315518 31 3689 305755 1.19 309444 32 3749 297303 1.25 301052 33 3869 294962 1.29 298831 34 3760 291565 1.27 295325 35 4063 301213 1.33 305276 36 3625 295778 1.21 299403 37 3576 294439 1.20 298015 38 3760 308275 1.20 312035 39 3740 281545 1.31 285285 40 3527 295408 1.18 298935 41 3484 278062 1.24 281546 42 3515 283963 1.22 287478 43 3629 269368 1.33 272997 44 3291 267901 1.21 271192 45 3531 268465 1.30 271996 46 3131 271012 1.14 274143 47 3288 264964 1.23 268252 48 3363 257773 1.29 261136 49 3097 263356 1.16 266453 50 3158 258619 1.21 261777 51 3116 253151 1.22 256267 52 2970 241976 1.21 244946 53 2923 239749 1.20 242672 54 2751 234354 1.16 237105 55 2952 242549 1.20 245501 56 2773 233852 1.17 236625 57 2731 241053 1.12 243784 58 2573 232076 1.10 234649 59 2693 223007 1.19 225700 60 2739 230671 1.17 233410 61 2751 219479 1.24 222230 62 2573 217704 1.17 220277 63 2571 218591 1.16 221162 64 2567 211308 1.20 213875 65 2429 214810 1.12 217239 66 2527 206242 1.21 208769 67 2239 206503 1.07 208742 68 2467 212805 1.15 215272 69 2436 206078 1.17 208514 70 2300 198576 1.14 200876 71 2321 197096 1.16 199417 72 2280 195516 1.15 197796 73 2276 194153 1.16 196429 74 2228 194167 1.13 196395 75 2225 191615 1.15 193840 76 2157 185472 1.15 187629 77 2336 183669 1.26 186005 78 2148 184215 1.15 186363 79 2078 186276 1.10 188354 80 2175 181094 1.19 183269 81 2218 180365 1.21 182583 82 2086 177635 1.16 179721 83 2136 175914 1.20 178050 84 2113 174349 1.20 176462 85 1909 171965 1.10 173874 86 2018 170573 1.17 172591 87 2025 168260 1.19 170285 88 1823 163060 1.11 164883 89 1904 162075 1.16 163979 90 1942 160995 1.19 162937 91 1888 160707 1.16 162595 92 1820 159148 1.13 160968 93 1786 156622 1.13 158408 94 1730 155109 1.10 156839 95 1769 152369 1.15 154138 96 1727 149802 1.14 151529 97 1588 148910 1.06 150498 98 1454 143134 1.01 144588 99 1108 0 100.00 1108