/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-230_S37_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-230_S37_L004_R2_001_val_2.fq.gz
Data processed at 05:18 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
29439432
Paired-end alignments with a unique best hit
11206080
Pairs without alignments under any condition
15456327
Pairs that did not map uniquely
2777025
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
319285007
Methylated C's in CpG context
13011809
Methylated C's in CHG context
1476854
Methylated C's in CHH context
3593317
Methylated C's in Unknown context
73261
Unmethylated C's in CpG context
33278910
Unmethylated C's in CHG context
67397808
Unmethylated C's in CHH context
200526309
Unmethylated C's in Unknown context
692785
Percentage methylation (CpG context)
28.1%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5519967
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5686110
original bottom strand
Deduplication
Alignments analysed
11206077
Unique alignments
7282444
Duplicates removed
3923633
Duplicated alignments were found at 2312024 different positions