/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R2_001_val_2.fq.gz
Data processed at 05:18 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
19891722
Paired-end alignments with a unique best hit
8020238
Pairs without alignments under any condition
9946231
Pairs that did not map uniquely
1925253
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
234928287
Methylated C's in CpG context
9402130
Methylated C's in CHG context
1206978
Methylated C's in CHH context
3281401
Methylated C's in Unknown context
62587
Unmethylated C's in CpG context
24903264
Unmethylated C's in CHG context
50373954
Unmethylated C's in CHH context
145760560
Unmethylated C's in Unknown context
512946
Percentage methylation (CpG context)
27.4%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
2.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3928266
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4091971
original bottom strand
Deduplication
Alignments analysed
8020237
Unique alignments
6036266
Duplicates removed
1983971
Duplicated alignments were found at 1179618 different positions