/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R2_001_val_2.fq.gz
Data processed at 05:18 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
11133150
Paired-end alignments with a unique best hit
4644692
Pairs without alignments under any condition
5510557
Pairs that did not map uniquely
977901
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
142579752
Methylated C's in CpG context
6040169
Methylated C's in CHG context
756511
Methylated C's in CHH context
2622283
Methylated C's in Unknown context
41120
Unmethylated C's in CpG context
13986909
Unmethylated C's in CHG context
29876966
Unmethylated C's in CHH context
89296914
Unmethylated C's in Unknown context
314802
Percentage methylation (CpG context)
30.2%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2290844
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2353848
original bottom strand
Deduplication
Alignments analysed
4644692
Unique alignments
3438115
Duplicates removed
1206577
Duplicated alignments were found at 766007 different positions
