CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 74350 113294 39.62 187644 2 70569 124864 36.11 195433 3 68943 108101 38.94 177044 4 72338 86205 45.63 158543 5 70025 74869 48.33 144894 6 71021 62269 53.28 133290 7 79988 64578 55.33 144566 8 38281 68947 35.70 107228 9 33880 63790 34.69 97670 10 34204 61992 35.56 96196 11 35536 64172 35.64 99708 12 34680 65597 34.58 100277 13 34279 67990 33.52 102269 14 33052 67110 33.00 100162 15 32202 68531 31.97 100733 16 30342 67742 30.93 98084 17 29126 65826 30.67 94952 18 29680 67654 30.49 97334 19 29058 67693 30.03 96751 20 29403 68363 30.07 97766 21 29722 69348 30.00 99070 22 28938 68206 29.79 97144 23 28589 67223 29.84 95812 24 28165 67925 29.31 96090 25 28011 68155 29.13 96166 26 27998 66740 29.55 94738 27 28253 68667 29.15 96920 28 28789 68033 29.73 96822 29 28076 69288 28.84 97364 30 27825 67815 29.09 95640 31 28164 66835 29.65 94999 32 27341 65758 29.37 93099 33 27872 65854 29.74 93726 34 28437 65883 30.15 94320 35 27786 65419 29.81 93205 36 27586 66764 29.24 94350 37 26973 64568 29.47 91541 38 26791 64485 29.35 91276 39 27472 66060 29.37 93532 40 27276 64995 29.56 92271 41 27125 64890 29.48 92015 42 27492 65566 29.54 93058 43 26919 64836 29.34 91755 44 27138 64381 29.65 91519 45 27002 63616 29.80 90618 46 27195 64630 29.62 91825 47 26657 62761 29.81 89418 48 27007 63274 29.91 90281 49 27282 62778 30.29 90060 50 26342 63848 29.21 90190 51 26368 63453 29.36 89821 52 26710 65235 29.05 91945 53 25784 61699 29.47 87483 54 25284 61039 29.29 86323 55 25030 59494 29.61 84524 56 25050 58761 29.89 83811 57 25235 59157 29.90 84392 58 25212 59536 29.75 84748 59 25088 58798 29.91 83886 60 24619 58285 29.70 82904 61 24445 57288 29.91 81733 62 24073 57960 29.35 82033 63 23591 56732 29.37 80323 64 23416 56950 29.14 80366 65 23630 55717 29.78 79347 66 23643 56588 29.47 80231 67 23155 54375 29.87 77530 68 22715 54518 29.41 77233 69 22872 53679 29.88 76551 70 22335 53671 29.39 76006 71 22074 52776 29.49 74850 72 21624 52574 29.14 74198 73 21115 51071 29.25 72186 74 21178 51150 29.28 72328 75 20791 50631 29.11 71422 76 20474 50378 28.90 70852 77 20790 49156 29.72 69946 78 20831 49879 29.46 70710 79 20542 48801 29.62 69343 80 19953 48775 29.03 68728 81 19745 48253 29.04 67998 82 19482 47419 29.12 66901 83 19657 47840 29.12 67497 84 19309 47749 28.79 67058 85 19203 46661 29.16 65864 86 18404 45454 28.82 63858 87 18216 45507 28.59 63723 88 18392 45349 28.85 63741 89 17906 44953 28.49 62859 90 17732 44216 28.62 61948 91 17553 43604 28.70 61157 92 17373 43264 28.65 60637 93 17118 43506 28.24 60624 94 17130 42790 28.59 59920 95 17130 42539 28.71 59669 96 17121 43316 28.33 60437 97 16336 41242 28.37 57578 98 15317 38902 28.25 54219 99 12113 30333 28.54 42446 100 15849 38886 28.96 54735 101 15431 38470 28.63 53901 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 96818 144763 40.08 241581 2 55975 136082 29.14 192057 3 25127 132100 15.98 157227 4 13529 132406 9.27 145935 5 8740 120732 6.75 129472 6 10147 116682 8.00 126829 7 5370 143426 3.61 148796 8 2574 153193 1.65 155767 9 2110 148313 1.40 150423 10 2069 143625 1.42 145694 11 2105 145267 1.43 147372 12 2161 144742 1.47 146903 13 1896 140463 1.33 142359 14 1816 139974 1.28 141790 15 1792 143602 1.23 145394 16 1540 142584 1.07 144124 17 1731 141175 1.21 142906 18 1511 140578 1.06 142089 19 1484 141311 1.04 142795 20 1531 147957 1.02 149488 21 1599 148503 1.07 150102 22 1671 146882 1.12 148553 23 1683 148129 1.12 149812 24 1546 150389 1.02 151935 25 1560 146245 1.06 147805 26 2015 147643 1.35 149658 27 1559 149160 1.03 150719 28 1586 147668 1.06 149254 29 1878 150348 1.23 152226 30 1565 151601 1.02 153166 31 1601 147140 1.08 148741 32 1587 148593 1.06 150180 33 1710 149969 1.13 151679 34 1758 147938 1.17 149696 35 1944 147085 1.30 149029 36 1635 147301 1.10 148936 37 1622 143691 1.12 145313 38 1895 146092 1.28 147987 39 1656 145221 1.13 146877 40 1626 145014 1.11 146640 41 1628 144096 1.12 145724 42 1568 144124 1.08 145692 43 1603 141737 1.12 143340 44 1696 143603 1.17 145299 45 1720 143058 1.19 144778 46 1755 140024 1.24 141779 47 1822 140717 1.28 142539 48 1728 143380 1.19 145108 49 1781 139246 1.26 141027 50 1923 139891 1.36 141814 51 1787 139884 1.26 141671 52 1885 139455 1.33 141340 53 1772 137305 1.27 139077 54 1912 137807 1.37 139719 55 1848 135622 1.34 137470 56 1977 136015 1.43 137992 57 1811 135299 1.32 137110 58 1846 133242 1.37 135088 59 1894 133565 1.40 135459 60 1828 133641 1.35 135469 61 1814 131115 1.36 132929 62 1958 131895 1.46 133853 63 1813 130224 1.37 132037 64 1934 130848 1.46 132782 65 2286 129000 1.74 131286 66 1833 126043 1.43 127876 67 1885 123207 1.51 125092 68 2079 124533 1.64 126612 69 1737 122872 1.39 124609 70 1688 119813 1.39 121501 71 1721 119245 1.42 120966 72 1707 118447 1.42 120154 73 1641 117162 1.38 118803 74 1860 116841 1.57 118701 75 1646 116192 1.40 117838 76 1521 112664 1.33 114185 77 1886 113545 1.63 115431 78 1624 110926 1.44 112550 79 1571 109430 1.42 111001 80 1597 109048 1.44 110645 81 1524 107187 1.40 108711 82 1530 105649 1.43 107179 83 1609 107006 1.48 108615 84 1600 107390 1.47 108990 85 1521 104665 1.43 106186 86 1678 105620 1.56 107298 87 1475 105541 1.38 107016 88 1527 102918 1.46 104445 89 1510 101594 1.46 103104 90 1504 101793 1.46 103297 91 1535 100091 1.51 101626 92 1600 99703 1.58 101303 93 1633 98364 1.63 99997 94 1564 96920 1.59 98484 95 1544 95677 1.59 97221 96 1592 94772 1.65 96364 97 1515 86816 1.72 88331 98 1392 79422 1.72 80814 99 879 51580 1.68 52459 100 1054 51361 2.01 52415 101 2249 86760 2.53 89009 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 111917 197471 36.17 309388 2 61026 209479 22.56 270505 3 34918 244899 12.48 279817 4 31066 261747 10.61 292813 5 30857 308123 9.10 338980 6 25075 332318 7.02 357393 7 19146 417322 4.39 436468 8 15049 447697 3.25 462746 9 10949 415564 2.57 426513 10 10792 407960 2.58 418752 11 14000 407249 3.32 421249 12 10982 410770 2.60 421752 13 12581 419434 2.91 432015 14 14358 430244 3.23 444602 15 11825 437747 2.63 449572 16 11640 441753 2.57 453393 17 14376 443889 3.14 458265 18 11244 459944 2.39 471188 19 11309 467328 2.36 478637 20 13583 480309 2.75 493892 21 11401 481308 2.31 492709 22 12448 480632 2.52 493080 23 14105 482382 2.84 496487 24 11501 482508 2.33 494009 25 12507 485514 2.51 498021 26 14536 487098 2.90 501634 27 11820 488696 2.36 500516 28 11500 490006 2.29 501506 29 14038 486945 2.80 500983 30 11575 483224 2.34 494799 31 12113 476158 2.48 488271 32 13656 478407 2.78 492063 33 11522 477113 2.36 488635 34 13270 478864 2.70 492134 35 14026 471667 2.89 485693 36 11735 477900 2.40 489635 37 11530 472604 2.38 484134 38 13869 473346 2.85 487215 39 11071 468267 2.31 479338 40 11588 467650 2.42 479238 41 13992 467286 2.91 481278 42 11609 470618 2.41 482227 43 12715 464241 2.67 476956 44 13583 466067 2.83 479650 45 11823 461077 2.50 472900 46 11768 458732 2.50 470500 47 13517 455409 2.88 468926 48 11004 454528 2.36 465532 49 11453 447722 2.49 459175 50 13034 443953 2.85 456987 51 10684 438497 2.38 449181 52 11884 436588 2.65 448472 53 13497 430739 3.04 444236 54 11131 430219 2.52 441350 55 11422 427830 2.60 439252 56 13481 424293 3.08 437774 57 10608 430095 2.41 440703 58 11105 424163 2.55 435268 59 13270 424737 3.03 438007 60 10614 418839 2.47 429453 61 11361 415183 2.66 426544 62 12499 409804 2.96 422303 63 10485 405183 2.52 415668 64 11518 402774 2.78 414292 65 12375 398833 3.01 411208 66 10341 395393 2.55 405734 67 10428 393258 2.58 403686 68 12373 389915 3.08 402288 69 9899 387471 2.49 397370 70 10082 384158 2.56 394240 71 11625 381295 2.96 392920 72 9833 378705 2.53 388538 73 11310 372841 2.94 384151 74 11561 371001 3.02 382562 75 9748 367731 2.58 377479 76 9892 365146 2.64 375038 77 11971 361547 3.20 373518 78 9040 359269 2.45 368309 79 9723 355771 2.66 365494 80 11342 351679 3.12 363021 81 9570 347881 2.68 357451 82 10399 342771 2.94 353170 83 11553 343316 3.26 354869 84 9535 338474 2.74 348009 85 9419 333493 2.75 342912 86 10750 330830 3.15 341580 87 9131 329132 2.70 338263 88 8992 325793 2.69 334785 89 10634 322182 3.20 332816 90 8570 320042 2.61 328612 91 9210 315336 2.84 324546 92 9941 313914 3.07 323855 93 8412 310562 2.64 318974 94 8751 306752 2.77 315503 95 10102 302348 3.23 312450 96 8007 297141 2.62 305148 97 7958 289516 2.68 297474 98 8854 268106 3.20 276960 99 5046 184673 2.66 189719 100 5900 163885 3.47 169785 101 8925 273273 3.16 282198 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57157 56094 50.47 113251 2 47817 45866 51.04 93683 3 51237 52043 49.61 103280 4 46408 57297 44.75 103705 5 20756 73857 21.94 94613 6 12740 40382 23.98 53122 7 10898 42634 20.36 53532 8 11570 38700 23.02 50270 9 9853 34181 22.38 44034 10 11040 37725 22.64 48765 11 11664 36495 24.22 48159 12 11463 35245 24.54 46708 13 11790 34343 25.56 46133 14 12184 35250 25.69 47434 15 11759 32249 26.72 44008 16 11326 30895 26.83 42221 17 13546 33424 28.84 46970 18 12901 32702 28.29 45603 19 12099 31550 27.72 43649 20 11408 30545 27.19 41953 21 11882 29571 28.66 41453 22 11985 30608 28.14 42593 23 11377 29340 27.94 40717 24 10575 27546 27.74 38121 25 11700 29648 28.30 41348 26 10650 28142 27.45 38792 27 11569 28051 29.20 39620 28 10729 26978 28.45 37707 29 11046 27789 28.44 38835 30 10620 25908 29.07 36528 31 10289 26203 28.20 36492 32 10074 24971 28.75 35045 33 11269 25708 30.48 36977 34 10749 27342 28.22 38091 35 13126 29008 31.15 42134 36 10645 25454 29.49 36099 37 10986 26332 29.44 37318 38 9696 25055 27.90 34751 39 10023 24981 28.63 35004 40 11038 24671 30.91 35709 41 9684 24514 28.32 34198 42 9905 24896 28.46 34801 43 9689 24370 28.45 34059 44 9393 23916 28.20 33309 45 11726 26627 30.57 38353 46 9018 21879 29.19 30897 47 8886 22037 28.74 30923 48 9223 22325 29.23 31548 49 8786 22633 27.96 31419 50 8460 21366 28.36 29826 51 8468 20888 28.85 29356 52 8477 21286 28.48 29763 53 8504 20529 29.29 29033 54 8561 20916 29.04 29477 55 8570 20812 29.17 29382 56 8180 20020 29.01 28200 57 8431 20313 29.33 28744 58 8246 20131 29.06 28377 59 7696 18936 28.90 26632 60 7793 19708 28.34 27501 61 7213 18704 27.83 25917 62 7121 18305 28.01 25426 63 7798 18411 29.75 26209 64 7427 18207 28.97 25634 65 7422 17183 30.16 24605 66 7631 18081 29.68 25712 67 7078 18236 27.96 25314 68 7711 18948 28.92 26659 69 7043 16949 29.36 23992 70 6667 16657 28.58 23324 71 6888 16073 30.00 22961 72 6510 15949 28.99 22459 73 6621 16609 28.50 23230 74 5889 15505 27.53 21394 75 5953 15752 27.43 21705 76 6396 15226 29.58 21622 77 6036 15034 28.65 21070 78 5991 15063 28.46 21054 79 5865 14774 28.42 20639 80 5651 14520 28.02 20171 81 5808 14607 28.45 20415 82 5735 14557 28.26 20292 83 5699 14113 28.77 19812 84 6429 15112 29.85 21541 85 5604 14263 28.21 19867 86 5362 14029 27.65 19391 87 5386 13498 28.52 18884 88 5346 13194 28.83 18540 89 5591 13698 28.99 19289 90 5658 13844 29.01 19502 91 5266 13171 28.56 18437 92 5040 12705 28.40 17745 93 5284 12837 29.16 18121 94 5278 12715 29.33 17993 95 5199 12694 29.06 17893 96 5059 12643 28.58 17702 97 5459 13345 29.03 18804 98 4844 11617 29.43 16461 99 4413 0 100.00 4413 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14617 71223 17.03 85840 2 14391 71418 16.77 85809 3 13180 72109 15.45 85289 4 14566 77847 15.76 92413 5 1643 141551 1.15 143194 6 1185 174909 0.67 176094 7 763 95978 0.79 96741 8 794 102058 0.77 102852 9 699 84620 0.82 85319 10 689 81101 0.84 81790 11 1084 111735 0.96 112819 12 789 86976 0.90 87765 13 777 85999 0.90 86776 14 761 81726 0.92 82487 15 697 78311 0.88 79008 16 678 73959 0.91 74637 17 775 78828 0.97 79603 18 1005 70036 1.41 71041 19 708 68028 1.03 68736 20 656 67335 0.96 67991 21 954 64644 1.45 65598 22 731 70525 1.03 71256 23 765 70354 1.08 71119 24 568 62525 0.90 63093 25 663 63812 1.03 64475 26 683 66696 1.01 67379 27 649 63230 1.02 63879 28 582 60519 0.95 61101 29 618 64460 0.95 65078 30 631 62045 1.01 62676 31 604 58500 1.02 59104 32 589 60590 0.96 61179 33 584 72940 0.79 73524 34 538 58851 0.91 59389 35 583 61413 0.94 61996 36 539 62206 0.86 62745 37 504 56185 0.89 56689 38 542 59565 0.90 60107 39 571 55260 1.02 55831 40 527 55612 0.94 56139 41 482 53524 0.89 54006 42 497 50988 0.97 51485 43 529 52235 1.00 52764 44 526 51691 1.01 52217 45 464 48807 0.94 49271 46 450 49193 0.91 49643 47 513 50376 1.01 50889 48 465 48287 0.95 48752 49 491 50070 0.97 50561 50 484 48396 0.99 48880 51 468 45934 1.01 46402 52 476 44609 1.06 45085 53 519 50099 1.03 50618 54 498 46087 1.07 46585 55 476 45165 1.04 45641 56 442 45840 0.96 46282 57 589 43930 1.32 44519 58 421 42786 0.97 43207 59 426 43687 0.97 44113 60 544 43046 1.25 43590 61 481 42472 1.12 42953 62 486 43752 1.10 44238 63 440 42927 1.01 43367 64 389 39825 0.97 40214 65 425 41648 1.01 42073 66 399 39017 1.01 39416 67 375 42125 0.88 42500 68 360 40447 0.88 40807 69 435 39653 1.09 40088 70 379 39557 0.95 39936 71 373 40329 0.92 40702 72 343 38193 0.89 38536 73 309 37156 0.82 37465 74 354 38554 0.91 38908 75 329 36785 0.89 37114 76 332 35475 0.93 35807 77 319 37656 0.84 37975 78 343 34838 0.97 35181 79 357 34992 1.01 35349 80 305 34355 0.88 34660 81 299 33101 0.90 33400 82 327 33089 0.98 33416 83 294 33075 0.88 33369 84 304 32141 0.94 32445 85 344 35563 0.96 35907 86 327 32304 1.00 32631 87 322 32328 0.99 32650 88 281 30409 0.92 30690 89 310 31939 0.96 32249 90 300 31804 0.93 32104 91 299 33014 0.90 33313 92 296 31306 0.94 31602 93 243 29742 0.81 29985 94 274 29337 0.93 29611 95 335 30470 1.09 30805 96 359 28528 1.24 28887 97 274 28405 0.96 28679 98 247 28447 0.86 28694 99 216 0 100.00 216 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22125 92534 19.30 114659 2 19034 75594 20.11 94628 3 19647 78109 20.10 97756 4 19150 75860 20.16 95010 5 5392 157338 3.31 162730 6 5267 211745 2.43 217012 7 5539 290964 1.87 296503 8 5911 284765 2.03 290676 9 6298 267910 2.30 274208 10 5788 274865 2.06 280653 11 6086 270056 2.20 276142 12 5792 252443 2.24 258235 13 5638 261631 2.11 267269 14 5318 261066 2.00 266384 15 5502 267426 2.02 272928 16 5094 257797 1.94 262891 17 5226 255605 2.00 260831 18 5227 254649 2.01 259876 19 4930 236390 2.04 241320 20 5123 250115 2.01 255238 21 5194 238264 2.13 243458 22 5110 228892 2.18 234002 23 4859 224589 2.12 229448 24 4562 215439 2.07 220001 25 4917 215380 2.23 220297 26 4777 213318 2.19 218095 27 5074 231183 2.15 236257 28 4463 217375 2.01 221838 29 4488 212918 2.06 217406 30 4799 206439 2.27 211238 31 4423 203087 2.13 207510 32 4436 197005 2.20 201441 33 4580 195979 2.28 200559 34 4568 194246 2.30 198814 35 4704 201390 2.28 206094 36 4273 199366 2.10 203639 37 4214 197156 2.09 201370 38 4403 208667 2.07 213070 39 4422 189045 2.29 193467 40 4256 199441 2.09 203697 41 4132 186138 2.17 190270 42 4201 191935 2.14 196136 43 4359 180661 2.36 185020 44 3896 179605 2.12 183501 45 4100 180844 2.22 184944 46 3741 182336 2.01 186077 47 3815 177333 2.11 181148 48 3973 174462 2.23 178435 49 3752 179627 2.05 183379 50 3752 173815 2.11 177567 51 3709 169204 2.15 172913 52 3560 161518 2.16 165078 53 3388 162227 2.05 165615 54 3225 158640 1.99 161865 55 3339 164982 1.98 168321 56 3274 157494 2.04 160768 57 3341 164614 1.99 167955 58 3064 157546 1.91 160610 59 3226 151204 2.09 154430 60 3259 156776 2.04 160035 61 3326 148589 2.19 151915 62 3125 147629 2.07 150754 63 2980 148493 1.97 151473 64 2977 143275 2.04 146252 65 2973 146758 1.99 149731 66 2979 140230 2.08 143209 67 2651 140624 1.85 143275 68 2845 145866 1.91 148711 69 3062 142477 2.10 145539 70 2748 135820 1.98 138568 71 2794 135017 2.03 137811 72 2719 134321 1.98 137040 73 2729 131798 2.03 134527 74 2611 133705 1.92 136316 75 2650 132162 1.97 134812 76 2462 126983 1.90 129445 77 2644 125794 2.06 128438 78 2760 127427 2.12 130187 79 2560 129670 1.94 132230 80 2618 123900 2.07 126518 81 2685 124641 2.11 127326 82 2575 121603 2.07 124178 83 2555 121255 2.06 123810 84 2494 120527 2.03 123021 85 2307 119225 1.90 121532 86 2364 117832 1.97 120196 87 2426 117813 2.02 120239 88 2165 113563 1.87 115728 89 2270 112940 1.97 115210 90 2398 112298 2.09 114696 91 2334 111888 2.04 114222 92 2192 110791 1.94 112983 93 2116 109087 1.90 111203 94 2092 108176 1.90 110268 95 2085 105937 1.93 108022 96 1988 104802 1.86 106790 97 1947 104999 1.82 106946 98 1710 100084 1.68 101794 99 1238 0 100.00 1238