CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 154436 201682 43.37 356118 2 152053 227365 40.08 379418 3 149969 207688 41.93 357657 4 161109 173672 48.12 334781 5 155945 150852 50.83 306797 6 160413 123930 56.42 284343 7 174209 121647 58.88 295856 8 84274 141002 37.41 225276 9 74979 131435 36.32 206414 10 74240 128340 36.65 202580 11 76481 132170 36.65 208651 12 75085 135267 35.69 210352 13 73486 138048 34.74 211534 14 69943 139656 33.37 209599 15 68197 141349 32.55 209546 16 63830 139944 31.32 203774 17 60595 136892 30.68 197487 18 61994 139992 30.69 201986 19 60854 140726 30.19 201580 20 60776 142798 29.85 203574 21 61634 143161 30.10 204795 22 60015 141302 29.81 201317 23 59681 140978 29.74 200659 24 59341 141365 29.57 200706 25 58606 139294 29.61 197900 26 59156 138219 29.97 197375 27 59389 142018 29.49 201407 28 60803 141690 30.03 202493 29 58907 140335 29.57 199242 30 58479 140956 29.32 199435 31 59329 138551 29.98 197880 32 57762 135466 29.89 193228 33 58943 137637 29.98 196580 34 60000 136181 30.58 196181 35 58200 135784 30.00 193984 36 57619 138064 29.45 195683 37 56780 134809 29.64 191589 38 55651 132831 29.53 188482 39 57394 135800 29.71 193194 40 56613 133302 29.81 189915 41 56255 133572 29.63 189827 42 57891 135611 29.92 193502 43 56484 133411 29.74 189895 44 55951 132674 29.66 188625 45 56660 132424 29.97 189084 46 56556 132662 29.89 189218 47 55598 130167 29.93 185765 48 55241 130210 29.79 185451 49 56642 129783 30.38 186425 50 55396 131168 29.69 186564 51 55274 130036 29.83 185310 52 56074 132629 29.72 188703 53 53821 127210 29.73 181031 54 53129 125547 29.73 178676 55 52634 122595 30.04 175229 56 52277 122197 29.96 174474 57 52263 123121 29.80 175384 58 52434 123018 29.89 175452 59 52158 120778 30.16 172936 60 51040 120898 29.69 171938 61 51403 119173 30.13 170576 62 50041 118946 29.61 168987 63 49380 117990 29.50 167370 64 48994 116436 29.62 165430 65 49093 116178 29.70 165271 66 50073 116332 30.09 166405 67 48919 114074 30.01 162993 68 48206 114258 29.67 162464 69 47936 112686 29.84 160622 70 47516 112367 29.72 159883 71 45903 109385 29.56 155288 72 45187 109032 29.30 154219 73 45052 107766 29.48 152818 74 44624 106212 29.58 150836 75 43278 106585 28.88 149863 76 43523 104593 29.38 148116 77 44014 103262 29.89 147276 78 43680 104368 29.50 148048 79 42735 102415 29.44 145150 80 42325 101942 29.34 144267 81 41918 101193 29.29 143111 82 40685 99450 29.03 140135 83 41344 99976 29.26 141320 84 40833 98727 29.26 139560 85 40242 97899 29.13 138141 86 39256 95743 29.08 134999 87 38038 95405 28.51 133443 88 38573 94517 28.98 133090 89 37938 93250 28.92 131188 90 37282 93130 28.59 130412 91 37023 91486 28.81 128509 92 36313 90502 28.63 126815 93 36436 90546 28.69 126982 94 35771 89425 28.57 125196 95 35428 87906 28.73 123334 96 35743 88738 28.71 124481 97 34181 85070 28.66 119251 98 32459 80219 28.81 112678 99 25584 62963 28.89 88547 100 33742 80173 29.62 113915 101 31767 80322 28.34 112089 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 183072 290937 38.62 474009 2 105524 284504 27.06 390028 3 45669 279276 14.05 324945 4 25706 271000 8.66 296706 5 17312 243003 6.65 260315 6 14282 228079 5.89 242361 7 11447 288897 3.81 300344 8 4892 315858 1.53 320750 9 4135 300406 1.36 304541 10 4164 291201 1.41 295365 11 4161 296673 1.38 300834 12 3985 291536 1.35 295521 13 3610 284047 1.25 287657 14 3456 284724 1.20 288180 15 3407 291166 1.16 294573 16 2921 292035 0.99 294956 17 2961 290350 1.01 293311 18 2741 288101 0.94 290842 19 2717 288978 0.93 291695 20 2815 303759 0.92 306574 21 2767 305406 0.90 308173 22 2986 302416 0.98 305402 23 2919 307637 0.94 310556 24 2914 308331 0.94 311245 25 2923 301631 0.96 304554 26 3156 301207 1.04 304363 27 2953 306333 0.95 309286 28 3030 304979 0.98 308009 29 3136 307932 1.01 311068 30 2950 311180 0.94 314130 31 3005 301049 0.99 304054 32 3055 306210 0.99 309265 33 3096 306537 1.00 309633 34 3134 301417 1.03 304551 35 3173 300782 1.04 303955 36 3257 301321 1.07 304578 37 3117 294065 1.05 297182 38 3295 299238 1.09 302533 39 3063 296347 1.02 299410 40 3003 294494 1.01 297497 41 3171 293860 1.07 297031 42 3251 294478 1.09 297729 43 3239 289481 1.11 292720 44 3263 293304 1.10 296567 45 3282 292165 1.11 295447 46 3178 288717 1.09 291895 47 3365 287863 1.16 291228 48 3339 292015 1.13 295354 49 3270 285677 1.13 288947 50 3461 283321 1.21 286782 51 3410 286228 1.18 289638 52 3423 283581 1.19 287004 53 3332 279395 1.18 282727 54 3450 282037 1.21 285487 55 3414 276492 1.22 279906 56 3385 278627 1.20 282012 57 3463 276271 1.24 279734 58 3343 272002 1.21 275345 59 3469 273177 1.25 276646 60 3371 272195 1.22 275566 61 3451 268488 1.27 271939 62 3519 269002 1.29 272521 63 3401 264398 1.27 267799 64 3415 263605 1.28 267020 65 3784 263107 1.42 266891 66 3466 256746 1.33 260212 67 3383 250930 1.33 254313 68 3556 253573 1.38 257129 69 3591 251516 1.41 255107 70 3292 245046 1.33 248338 71 3248 244457 1.31 247705 72 3277 243824 1.33 247101 73 3301 240905 1.35 244206 74 3249 239625 1.34 242874 75 3007 237293 1.25 240300 76 3040 231896 1.29 234936 77 3237 232209 1.37 235446 78 3060 228202 1.32 231262 79 3089 223137 1.37 226226 80 3149 222617 1.39 225766 81 3053 219640 1.37 222693 82 2939 216448 1.34 219387 83 3132 219183 1.41 222315 84 3052 219061 1.37 222113 85 2913 214972 1.34 217885 86 2965 214704 1.36 217669 87 3012 214272 1.39 217284 88 2999 210125 1.41 213124 89 2932 207564 1.39 210496 90 2868 207226 1.37 210094 91 2980 205136 1.43 208116 92 3051 203891 1.47 206942 93 3079 201654 1.50 204733 94 2912 197585 1.45 200497 95 2981 194985 1.51 197966 96 2958 192977 1.51 195935 97 2826 177377 1.57 180203 98 2615 163137 1.58 165752 99 1749 105147 1.64 106896 100 1904 105801 1.77 107705 101 4071 178186 2.23 182257 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 223500 395296 36.12 618796 2 110799 431619 20.43 542418 3 58320 497294 10.50 555614 4 50756 521790 8.86 572546 5 47239 621213 7.07 668452 6 38040 672751 5.35 710791 7 32743 852078 3.70 884821 8 18770 922619 1.99 941389 9 14443 847381 1.68 861824 10 13884 821432 1.66 835316 11 15598 823480 1.86 839078 12 13434 830525 1.59 843959 13 14406 841251 1.68 855657 14 15092 863543 1.72 878635 15 13512 886060 1.50 899572 16 13011 897135 1.43 910146 17 14418 903940 1.57 918358 18 12677 934221 1.34 946898 19 12886 951700 1.34 964586 20 14500 981137 1.46 995637 21 12894 983743 1.29 996637 22 13339 985183 1.34 998522 23 14823 984376 1.48 999199 24 12899 983087 1.30 995986 25 13580 982095 1.36 995675 26 14912 990259 1.48 1005171 27 13076 994509 1.30 1007585 28 12860 995989 1.27 1008849 29 14751 989840 1.47 1004591 30 12938 981964 1.30 994902 31 13478 970222 1.37 983700 32 14250 969292 1.45 983542 33 12876 969833 1.31 982709 34 14240 972521 1.44 986761 35 14617 958449 1.50 973066 36 12942 968131 1.32 981073 37 12728 958520 1.31 971248 38 14557 958747 1.50 973304 39 12802 948643 1.33 961445 40 12950 945704 1.35 958654 41 14376 947843 1.49 962219 42 13318 950566 1.38 963884 43 13597 939147 1.43 952744 44 14478 942203 1.51 956681 45 12985 929170 1.38 942155 46 13065 930261 1.38 943326 47 14129 921800 1.51 935929 48 12567 918189 1.35 930756 49 12845 908087 1.39 920932 50 13871 901218 1.52 915089 51 12279 890459 1.36 902738 52 12830 886127 1.43 898957 53 13659 875459 1.54 889118 54 12626 874513 1.42 887139 55 12768 866124 1.45 878892 56 13599 864396 1.55 877995 57 12271 867905 1.39 880176 58 12773 863491 1.46 876264 59 13726 863626 1.56 877352 60 11860 851779 1.37 863639 61 12525 843177 1.46 855702 62 13183 834038 1.56 847221 63 11886 826616 1.42 838502 64 12696 818546 1.53 831242 65 13130 813799 1.59 826929 66 11447 808879 1.40 820326 67 11879 802964 1.46 814843 68 12805 795872 1.58 808677 69 11088 790364 1.38 801452 70 11285 782177 1.42 793462 71 12273 777506 1.55 789779 72 11177 774310 1.42 785487 73 11662 760512 1.51 772174 74 12070 758555 1.57 770625 75 10870 752236 1.42 763106 76 10937 747864 1.44 758801 77 12184 741370 1.62 753554 78 10454 733759 1.40 744213 79 10955 730177 1.48 741132 80 11712 722247 1.60 733959 81 10761 711328 1.49 722089 82 10768 704118 1.51 714886 83 11690 702936 1.64 714626 84 10640 692566 1.51 703206 85 10370 683535 1.49 693905 86 11010 676112 1.60 687122 87 10116 670112 1.49 680228 88 9973 664744 1.48 674717 89 10964 657817 1.64 668781 90 9678 653638 1.46 663316 91 9671 643639 1.48 653310 92 10419 641233 1.60 651652 93 9250 633791 1.44 643041 94 9627 624827 1.52 634454 95 10372 616403 1.65 626775 96 9148 604296 1.49 613444 97 9098 589020 1.52 598118 98 9410 546905 1.69 556315 99 5803 378002 1.51 383805 100 6167 333936 1.81 340103 101 9674 554928 1.71 564602 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 120173 117456 50.57 237629 2 101302 96793 51.14 198095 3 109035 110643 49.63 219678 4 98661 120356 45.05 219017 5 43837 156342 21.90 200179 6 26908 85270 23.99 112178 7 23179 89045 20.65 112224 8 24376 81523 23.02 105899 9 21333 71444 22.99 92777 10 22908 78338 22.63 101246 11 24884 76613 24.52 101497 12 24188 73125 24.86 97313 13 24512 71875 25.43 96387 14 25649 73361 25.91 99010 15 25351 68137 27.12 93488 16 23666 64115 26.96 87781 17 28131 70575 28.50 98706 18 26852 68963 28.02 95815 19 26025 66697 28.07 92722 20 23902 63530 27.34 87432 21 25166 61706 28.97 86872 22 25051 63670 28.24 88721 23 23890 61196 28.08 85086 24 21970 57967 27.48 79937 25 24550 61927 28.39 86477 26 22637 57890 28.11 80527 27 23559 59170 28.48 82729 28 22107 56046 28.29 78153 29 22848 58094 28.23 80942 30 21887 54742 28.56 76629 31 21489 55113 28.05 76602 32 20546 52036 28.31 72582 33 23924 53636 30.85 77560 34 21926 55561 28.30 77487 35 26681 60384 30.64 87065 36 21968 53193 29.23 75161 37 22744 54929 29.28 77673 38 20125 51011 28.29 71136 39 21057 51401 29.06 72458 40 23233 50692 31.43 73925 41 20282 50027 28.85 70309 42 20557 51884 28.38 72441 43 20094 49276 28.97 69370 44 19130 48607 28.24 67737 45 23649 54405 30.30 78054 46 18310 44966 28.94 63276 47 18630 45892 28.87 64522 48 18787 46911 28.60 65698 49 18160 46585 28.05 64745 50 17312 44291 28.10 61603 51 17352 43058 28.72 60410 52 16969 43563 28.03 60532 53 17659 42704 29.25 60363 54 17610 43057 29.03 60667 55 17518 43002 28.95 60520 56 16480 41202 28.57 57682 57 17067 42678 28.57 59745 58 16777 41462 28.81 58239 59 15901 39099 28.91 55000 60 16422 40024 29.09 56446 61 14787 38488 27.76 53275 62 15211 37714 28.74 52925 63 16224 37910 29.97 54134 64 14955 36994 28.79 51949 65 14650 35112 29.44 49762 66 15693 36758 29.92 52451 67 14259 37439 27.58 51698 68 16201 38781 29.47 54982 69 14392 34608 29.37 49000 70 13776 34647 28.45 48423 71 14150 33293 29.83 47443 72 13348 33120 28.73 46468 73 13416 33353 28.69 46769 74 12184 31609 27.82 43793 75 12499 31150 28.64 43649 76 12653 30584 29.26 43237 77 12379 30712 28.73 43091 78 12261 30820 28.46 43081 79 11739 30372 27.88 42111 80 11805 29663 28.47 41468 81 11355 29853 27.56 41208 82 11631 29381 28.36 41012 83 11967 28309 29.71 40276 84 12844 31580 28.91 44424 85 11055 29072 27.55 40127 86 10863 28199 27.81 39062 87 10835 26979 28.65 37814 88 10853 27095 28.60 37948 89 11538 28529 28.80 40067 90 11327 27804 28.95 39131 91 10505 26746 28.20 37251 92 10167 25990 28.12 36157 93 10588 26234 28.75 36822 94 10744 26029 29.22 36773 95 10455 25515 29.07 35970 96 10168 25904 28.19 36072 97 11174 27390 28.98 38564 98 9960 23720 29.57 33680 99 8932 0 100.00 8932 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29664 146655 16.82 176319 2 29304 147105 16.61 176409 3 26887 148185 15.36 175072 4 29568 160005 15.60 189573 5 3141 292939 1.06 296080 6 2398 360541 0.66 362939 7 1450 198194 0.73 199644 8 1484 209675 0.70 211159 9 1277 173626 0.73 174903 10 1274 166136 0.76 167410 11 1843 228626 0.80 230469 12 1395 179513 0.77 180908 13 1394 177314 0.78 178708 14 1416 167230 0.84 168646 15 1380 161075 0.85 162455 16 1194 151227 0.78 152421 17 1363 160801 0.84 162164 18 1438 143503 0.99 144941 19 1288 140298 0.91 141586 20 1208 138714 0.86 139922 21 1345 131957 1.01 133302 22 1278 143826 0.88 145104 23 1172 145348 0.80 146520 24 1114 128511 0.86 129625 25 1115 130504 0.85 131619 26 1250 136437 0.91 137687 27 1054 128645 0.81 129699 28 1069 123464 0.86 124533 29 1203 131894 0.90 133097 30 1139 127532 0.89 128671 31 1022 120864 0.84 121886 32 1035 122827 0.84 123862 33 1148 148467 0.77 149615 34 1002 119730 0.83 120732 35 1075 124155 0.86 125230 36 1050 126418 0.82 127468 37 937 114146 0.81 115083 38 1052 121900 0.86 122952 39 984 110954 0.88 111938 40 1001 112809 0.88 113810 41 895 107691 0.82 108586 42 920 102832 0.89 103752 43 991 106374 0.92 107365 44 891 105147 0.84 106038 45 847 99350 0.85 100197 46 835 98754 0.84 99589 47 935 101131 0.92 102066 48 905 97759 0.92 98664 49 911 102233 0.88 103144 50 912 96900 0.93 97812 51 840 92166 0.90 93006 52 841 90638 0.92 91479 53 859 101413 0.84 102272 54 826 93118 0.88 93944 55 831 90964 0.91 91795 56 842 92105 0.91 92947 57 814 87645 0.92 88459 58 751 85463 0.87 86214 59 735 88554 0.82 89289 60 773 86665 0.88 87438 61 793 85641 0.92 86434 62 768 87579 0.87 88347 63 775 86087 0.89 86862 64 668 81134 0.82 81802 65 706 82945 0.84 83651 66 625 78437 0.79 79062 67 742 84161 0.87 84903 68 728 80420 0.90 81148 69 686 80366 0.85 81052 70 639 79897 0.79 80536 71 660 81034 0.81 81694 72 656 75732 0.86 76388 73 618 73757 0.83 74375 74 639 75870 0.84 76509 75 584 73747 0.79 74331 76 586 70438 0.83 71024 77 612 74714 0.81 75326 78 548 69716 0.78 70264 79 602 70079 0.85 70681 80 518 68389 0.75 68907 81 538 65856 0.81 66394 82 571 64885 0.87 65456 83 623 65835 0.94 66458 84 541 64386 0.83 64927 85 592 71529 0.82 72121 86 509 63939 0.79 64448 87 539 63622 0.84 64161 88 517 61050 0.84 61567 89 570 63238 0.89 63808 90 600 63013 0.94 63613 91 563 65875 0.85 66438 92 566 61819 0.91 62385 93 519 59074 0.87 59593 94 546 58343 0.93 58889 95 556 60047 0.92 60603 96 486 56844 0.85 57330 97 548 56419 0.96 56967 98 443 56415 0.78 56858 99 337 0 100.00 337 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 38766 189057 17.02 227823 2 30956 154964 16.65 185920 3 31632 157871 16.69 189503 4 30580 154723 16.50 185303 5 5686 319544 1.75 325230 6 5588 431035 1.28 436623 7 6352 592703 1.06 599055 8 6314 577800 1.08 584114 9 6771 545362 1.23 552133 10 6369 561628 1.12 567997 11 6420 550418 1.15 556838 12 6244 515263 1.20 521507 13 6061 531151 1.13 537212 14 6111 530253 1.14 536364 15 6339 545818 1.15 552157 16 5753 527160 1.08 532913 17 6217 521922 1.18 528139 18 6083 520474 1.16 526557 19 5716 479932 1.18 485648 20 5834 511782 1.13 517616 21 5725 482769 1.17 488494 22 5555 465422 1.18 470977 23 5373 455862 1.16 461235 24 5256 439754 1.18 445010 25 5434 437445 1.23 442879 26 5255 436414 1.19 441669 27 5589 470164 1.17 475753 28 5158 442832 1.15 447990 29 5061 430382 1.16 435443 30 5179 420497 1.22 425676 31 4869 413274 1.16 418143 32 4695 399812 1.16 404507 33 4927 398048 1.22 402975 34 4792 394342 1.20 399134 35 5503 410561 1.32 416064 36 4893 401752 1.20 406645 37 4824 399364 1.19 404188 38 5028 421579 1.18 426607 39 4723 381859 1.22 386582 40 4775 405642 1.16 410417 41 4464 377279 1.17 381743 42 4663 388213 1.19 392876 43 4680 367373 1.26 372053 44 4242 363148 1.15 367390 45 4612 366119 1.24 370731 46 4411 369651 1.18 374062 47 4255 357911 1.17 362166 48 4422 350925 1.24 355347 49 4156 361417 1.14 365573 50 4175 350805 1.18 354980 51 4025 341837 1.16 345862 52 3906 327143 1.18 331049 53 3923 326118 1.19 330041 54 3742 319815 1.16 323557 55 3902 331831 1.16 335733 56 3624 318263 1.13 321887 57 3795 331215 1.13 335010 58 3633 316226 1.14 319859 59 3548 303284 1.16 306832 60 3741 314771 1.17 318512 61 3687 298752 1.22 302439 62 3442 295484 1.15 298926 63 3491 298651 1.16 302142 64 3323 287320 1.14 290643 65 3230 294496 1.08 297726 66 3360 281743 1.18 285103 67 3233 282253 1.13 285486 68 3429 292812 1.16 296241 69 3387 283851 1.18 287238 70 3098 270161 1.13 273259 71 3096 268506 1.14 271602 72 3115 267962 1.15 271077 73 3059 265212 1.14 268271 74 2909 266222 1.08 269131 75 3052 263141 1.15 266193 76 2841 252233 1.11 255074 77 2938 251442 1.15 254380 78 3028 252807 1.18 255835 79 2899 257615 1.11 260514 80 2791 247996 1.11 250787 81 2939 247789 1.17 250728 82 2812 243401 1.14 246213 83 2808 241621 1.15 244429 84 2891 238219 1.20 241110 85 2724 236298 1.14 239022 86 2645 234594 1.11 237239 87 2777 232535 1.18 235312 88 2479 223410 1.10 225889 89 2652 223511 1.17 226163 90 2612 222288 1.16 224900 91 2478 220982 1.11 223460 92 2344 217779 1.06 220123 93 2417 216178 1.11 218595 94 2351 214896 1.08 217247 95 2366 208895 1.12 211261 96 2338 206139 1.12 208477 97 2255 205801 1.08 208056 98 1899 199506 0.94 201405 99 1525 0 100.00 1525