EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6737676 lines in total Total number of methylation call strings processed: 13475352 Final Cytosine Methylation Report ================================= Total number of C's analysed: 128475689 Total methylated C's in CpG context: 5690111 Total methylated C's in CHG context: 686060 Total methylated C's in CHH context: 1836981 Total C to T conversions in CpG context: 12491913 Total C to T conversions in CHG context: 26714902 Total C to T conversions in CHH context: 81055722 C methylated in CpG context: 31.3% C methylated in CHG context: 2.5% C methylated in CHH context: 2.2%