CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 79937 115691 40.86 195628 2 78647 131311 37.46 209958 3 76077 118325 39.13 194402 4 79698 96014 45.36 175712 5 78305 83429 48.42 161734 6 81197 67891 54.46 149088 7 91136 66653 57.76 157789 8 42469 76799 35.61 119268 9 37477 70196 34.81 107673 10 36797 69042 34.77 105839 11 38299 70661 35.15 108960 12 37290 72410 33.99 109700 13 36880 74428 33.13 111308 14 35577 74697 32.26 110274 15 35188 75484 31.79 110672 16 32593 74703 30.38 107296 17 31637 73623 30.06 105260 18 32586 75074 30.27 107660 19 31612 75500 29.51 107112 20 32561 76601 29.83 109162 21 32232 77553 29.36 109785 22 31722 76264 29.38 107986 23 31490 75049 29.56 106539 24 31609 75282 29.57 106891 25 31144 74835 29.39 105979 26 31463 73942 29.85 105405 27 31210 75427 29.27 106637 28 32146 75245 29.93 107391 29 30986 75553 29.08 106539 30 30320 74861 28.83 105181 31 31090 72944 29.88 104034 32 30186 71504 29.68 101690 33 30610 71659 29.93 102269 34 31148 71047 30.48 102195 35 30322 71583 29.76 101905 36 30032 72158 29.39 102190 37 29131 69806 29.44 98937 38 28481 69054 29.20 97535 39 29560 70674 29.49 100234 40 29298 68966 29.82 98264 41 29119 68590 29.80 97709 42 29594 70200 29.66 99794 43 28646 68014 29.64 96660 44 27967 67218 29.38 95185 45 28374 66523 29.90 94897 46 28262 67514 29.51 95776 47 28115 66004 29.87 94119 48 27180 66049 29.15 93229 49 27983 65440 29.95 93423 50 27501 65651 29.52 93152 51 27000 65327 29.24 92327 52 27254 66244 29.15 93498 53 26333 63073 29.45 89406 54 25589 62375 29.09 87964 55 25506 60850 29.54 86356 56 25173 60280 29.46 85453 57 25384 60395 29.59 85779 58 25063 60095 29.43 85158 59 24772 58807 29.64 83579 60 24371 59057 29.21 83428 61 24222 57889 29.50 82111 62 23679 57969 29.00 81648 63 23292 56740 29.10 80032 64 22986 56564 28.90 79550 65 23171 55558 29.43 78729 66 23431 55692 29.61 79123 67 22758 54391 29.50 77149 68 22415 53806 29.41 76221 69 22089 53435 29.25 75524 70 22060 52710 29.50 74770 71 21188 51876 29.00 73064 72 20957 51133 29.07 72090 73 20439 50523 28.80 70962 74 20249 49258 29.13 69507 75 19930 49325 28.78 69255 76 19709 49128 28.63 68837 77 19935 48317 29.21 68252 78 19941 48565 29.11 68506 79 19236 47304 28.91 66540 80 19132 47115 28.88 66247 81 18700 46758 28.57 65458 82 18104 45818 28.32 63922 83 18567 46030 28.74 64597 84 18311 46037 28.46 64348 85 17757 45001 28.29 62758 86 17555 43920 28.56 61475 87 16946 43449 28.06 60395 88 17241 43158 28.55 60399 89 16713 42441 28.25 59154 90 16800 42245 28.45 59045 91 16323 41525 28.22 57848 92 16288 40904 28.48 57192 93 16142 41092 28.20 57234 94 15733 40388 28.03 56121 95 15785 40201 28.19 55986 96 15973 40268 28.40 56241 97 15067 38746 28.00 53813 98 14272 36310 28.22 50582 99 11231 28470 28.29 39701 100 14511 36200 28.62 50711 101 13855 35592 28.02 49447 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 100739 153368 39.64 254107 2 56690 149607 27.48 206297 3 23820 146802 13.96 170622 4 12991 140980 8.44 153971 5 8950 128148 6.53 137098 6 8004 119593 6.27 127597 7 5847 150585 3.74 156432 8 2506 166079 1.49 168585 9 2093 159440 1.30 161533 10 2188 154453 1.40 156641 11 2153 155448 1.37 157601 12 2104 153958 1.35 156062 13 1939 149462 1.28 151401 14 1788 150088 1.18 151876 15 1755 154118 1.13 155873 16 1557 154653 1.00 156210 17 1569 152399 1.02 153968 18 1500 151772 0.98 153272 19 1468 152064 0.96 153532 20 1675 159640 1.04 161315 21 1750 160632 1.08 162382 22 1798 158440 1.12 160238 23 1660 160347 1.02 162007 24 1732 161298 1.06 163030 25 1787 157596 1.12 159383 26 1951 157392 1.22 159343 27 1807 159262 1.12 161069 28 1796 158171 1.12 159967 29 1892 159877 1.17 161769 30 1805 160932 1.11 162737 31 1886 155830 1.20 157716 32 1891 157197 1.19 159088 33 1889 156654 1.19 158543 34 1989 154297 1.27 156286 35 2003 153837 1.29 155840 36 1874 154574 1.20 156448 37 1842 149404 1.22 151246 38 1972 151735 1.28 153707 39 1908 150118 1.26 152026 40 1953 149086 1.29 151039 41 1890 147991 1.26 149881 42 1927 147229 1.29 149156 43 1890 144971 1.29 146861 44 1938 145972 1.31 147910 45 1872 144259 1.28 146131 46 1888 142562 1.31 144450 47 1961 142167 1.36 144128 48 1830 144608 1.25 146438 49 1864 139851 1.32 141715 50 1946 139576 1.38 141522 51 1909 140215 1.34 142124 52 1933 138875 1.37 140808 53 1938 135738 1.41 137676 54 1883 136450 1.36 138333 55 1879 132604 1.40 134483 56 1851 134768 1.35 136619 57 1903 132941 1.41 134844 58 1871 130240 1.42 132111 59 1875 130586 1.42 132461 60 1776 130247 1.35 132023 61 1865 127371 1.44 129236 62 1887 127259 1.46 129146 63 1795 125312 1.41 127107 64 1821 125032 1.44 126853 65 1869 124521 1.48 126390 66 1719 120433 1.41 122152 67 1757 117530 1.47 119287 68 1866 118108 1.56 119974 69 1702 117245 1.43 118947 70 1694 113596 1.47 115290 71 1654 114234 1.43 115888 72 1667 112723 1.46 114390 73 1637 111531 1.45 113168 74 1630 110099 1.46 111729 75 1548 109623 1.39 111171 76 1529 105891 1.42 107420 77 1684 106428 1.56 108112 78 1578 103712 1.50 105290 79 1553 102416 1.49 103969 80 1528 101668 1.48 103196 81 1459 100619 1.43 102078 82 1473 98766 1.47 100239 83 1556 100256 1.53 101812 84 1439 99333 1.43 100772 85 1470 97327 1.49 98797 86 1484 97468 1.50 98952 87 1365 97683 1.38 99048 88 1338 95307 1.38 96645 89 1460 93531 1.54 94991 90 1442 92509 1.53 93951 91 1338 91419 1.44 92757 92 1466 92560 1.56 94026 93 1491 90215 1.63 91706 94 1486 88099 1.66 89585 95 1392 87675 1.56 89067 96 1426 85696 1.64 87122 97 1288 78588 1.61 79876 98 1223 71791 1.68 73014 99 801 46515 1.69 47316 100 885 46525 1.87 47410 101 1921 78882 2.38 80803 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 111878 199476 35.93 311354 2 54872 214605 20.36 269477 3 29667 254001 10.46 283668 4 26003 266452 8.89 292455 5 25373 323114 7.28 348487 6 20382 353422 5.45 373804 7 17783 452351 3.78 470134 8 10565 495917 2.09 506482 9 8051 455455 1.74 463506 10 7849 440145 1.75 447994 11 8805 439832 1.96 448637 12 7574 441939 1.68 449513 13 8237 449247 1.80 457484 14 8954 459155 1.91 468109 15 7984 469316 1.67 477300 16 7736 470876 1.62 478612 17 8712 474511 1.80 483223 18 7550 489687 1.52 497237 19 7529 497496 1.49 505025 20 8665 511938 1.66 520603 21 7713 510719 1.49 518432 22 8185 509864 1.58 518049 23 9193 509302 1.77 518495 24 7839 505267 1.53 513106 25 8256 506365 1.60 514621 26 9189 507587 1.78 516776 27 7912 508928 1.53 516840 28 7859 508531 1.52 516390 29 9131 504592 1.78 513723 30 7871 500418 1.55 508289 31 8212 491177 1.64 499389 32 8654 489694 1.74 498348 33 7808 487559 1.58 495367 34 8477 488943 1.70 497420 35 8779 481478 1.79 490257 36 7850 483814 1.60 491664 37 7472 477594 1.54 485066 38 8574 475900 1.77 484474 39 7538 471426 1.57 478964 40 7666 468696 1.61 476362 41 8462 468117 1.78 476579 42 7570 468277 1.59 475847 43 7836 459726 1.68 467562 44 8291 461227 1.77 469518 45 7463 453398 1.62 460861 46 7390 451333 1.61 458723 47 8038 446978 1.77 455016 48 7239 443797 1.60 451036 49 7280 437218 1.64 444498 50 7879 433284 1.79 441163 51 7080 427141 1.63 434221 52 7197 422366 1.68 429563 53 7675 417006 1.81 424681 54 7071 414427 1.68 421498 55 7080 411991 1.69 419071 56 7697 409440 1.85 417137 57 6686 411421 1.60 418107 58 6908 406822 1.67 413730 59 7810 405370 1.89 413180 60 6545 398720 1.61 405265 61 6907 395058 1.72 401965 62 7317 388594 1.85 395911 63 6547 384224 1.68 390771 64 6921 380112 1.79 387033 65 7163 377040 1.86 384203 66 6232 371949 1.65 378181 67 6398 368070 1.71 374468 68 6926 366489 1.85 373415 69 6055 362291 1.64 368346 70 5952 358744 1.63 364696 71 6725 355665 1.86 362390 72 5797 352269 1.62 358066 73 6422 345177 1.83 351599 74 6405 344084 1.83 350489 75 5709 340465 1.65 346174 76 5706 338507 1.66 344213 77 6682 333311 1.97 339993 78 5528 331095 1.64 336623 79 5691 328374 1.70 334065 80 6240 324149 1.89 330389 81 5556 318620 1.71 324176 82 5795 314695 1.81 320490 83 6310 314221 1.97 320531 84 5430 309648 1.72 315078 85 5419 305145 1.74 310564 86 5763 301494 1.88 307257 87 5376 299067 1.77 304443 88 5094 294898 1.70 299992 89 5993 291159 2.02 297152 90 5083 288878 1.73 293961 91 5086 285865 1.75 290951 92 5430 282475 1.89 287905 93 4915 279729 1.73 284644 94 4976 275348 1.78 280324 95 5405 271252 1.95 276657 96 4600 265621 1.70 270221 97 4536 257542 1.73 262078 98 4800 239308 1.97 244108 99 2958 164566 1.77 167524 100 3279 144628 2.22 147907 101 5064 242040 2.05 247104 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52440 52760 49.85 105200 2 43481 42759 50.42 86240 3 47464 48604 49.41 96068 4 42796 53586 44.40 96382 5 19114 69288 21.62 88402 6 11667 38184 23.40 49851 7 9955 39400 20.17 49355 8 10394 36063 22.37 46457 9 8916 31418 22.11 40334 10 10077 34805 22.45 44882 11 10599 33942 23.80 44541 12 10511 32436 24.47 42947 13 10278 31408 24.66 41686 14 10797 32467 24.96 43264 15 10790 29627 26.70 40417 16 10141 28689 26.12 38830 17 11759 30491 27.83 42250 18 11450 30067 27.58 41517 19 10905 28950 27.36 39855 20 10167 28107 26.56 38274 21 10530 26956 28.09 37486 22 10572 27450 27.80 38022 23 9824 26460 27.08 36284 24 9278 25166 26.94 34444 25 10389 27130 27.69 37519 26 9546 24970 27.66 34516 27 10171 25662 28.38 35833 28 9366 24118 27.97 33484 29 9968 25148 28.39 35116 30 9198 23658 27.99 32856 31 8911 23497 27.50 32408 32 8756 22494 28.02 31250 33 9856 23023 29.98 32879 34 9312 24272 27.73 33584 35 11134 26196 29.83 37330 36 9244 22642 28.99 31886 37 9489 23555 28.72 33044 38 8468 22487 27.36 30955 39 8908 22188 28.65 31096 40 9622 21795 30.63 31417 41 8553 21546 28.42 30099 42 8459 22440 27.38 30899 43 8332 21187 28.23 29519 44 8127 20737 28.16 28864 45 9905 23404 29.74 33309 46 7610 19200 28.38 26810 47 7569 19669 27.79 27238 48 7976 19740 28.78 27716 49 7560 20135 27.30 27695 50 7107 18870 27.36 25977 51 7287 18527 28.23 25814 52 7174 18568 27.87 25742 53 7496 17999 29.40 25495 54 7450 18654 28.54 26104 55 7589 18410 29.19 25999 56 6678 17691 27.40 24369 57 7043 18023 28.10 25066 58 6971 17677 28.28 24648 59 6691 16765 28.53 23456 60 6819 17232 28.35 24051 61 6088 16345 27.14 22433 62 6134 15742 28.04 21876 63 6706 15786 29.82 22492 64 6184 15880 28.03 22064 65 6190 14912 29.33 21102 66 6482 15415 29.60 21897 67 5875 16153 26.67 22028 68 6680 16490 28.83 23170 69 5829 14586 28.55 20415 70 5587 14324 28.06 19911 71 5758 14012 29.12 19770 72 5594 13364 29.51 18958 73 5439 13997 27.98 19436 74 4950 13450 26.90 18400 75 5007 13251 27.42 18258 76 5198 12991 28.58 18189 77 5096 13048 28.09 18144 78 5030 12909 28.04 17939 79 4894 12485 28.16 17379 80 4823 12487 27.86 17310 81 4855 12729 27.61 17584 82 4911 12472 28.25 17383 83 4878 11963 28.97 16841 84 5332 13521 28.28 18853 85 4596 12091 27.54 16687 86 4515 11856 27.58 16371 87 4489 11689 27.75 16178 88 4452 11321 28.23 15773 89 4816 11815 28.96 16631 90 4686 11599 28.77 16285 91 4244 11270 27.36 15514 92 4239 10973 27.87 15212 93 4347 10703 28.88 15050 94 4434 11101 28.54 15535 95 4294 10657 28.72 14951 96 4105 10712 27.70 14817 97 4513 11265 28.60 15778 98 4041 9850 29.09 13891 99 3674 0 100.00 3674 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13345 65194 16.99 78539 2 12890 64055 16.75 76945 3 11619 64378 15.29 75997 4 12932 69240 15.74 82172 5 1419 128017 1.10 129436 6 1114 157695 0.70 158809 7 693 86930 0.79 87623 8 670 91947 0.72 92617 9 530 75608 0.70 76138 10 569 72376 0.78 72945 11 893 101192 0.87 102085 12 568 78468 0.72 79036 13 614 76955 0.79 77569 14 594 72853 0.81 73447 15 605 70526 0.85 71131 16 545 65611 0.82 66156 17 616 70359 0.87 70975 18 643 62078 1.03 62721 19 567 60195 0.93 60762 20 533 59693 0.88 60226 21 633 57608 1.09 58241 22 574 62391 0.91 62965 23 576 62106 0.92 62682 24 493 55334 0.88 55827 25 500 56157 0.88 56657 26 534 58744 0.90 59278 27 546 55604 0.97 56150 28 464 52819 0.87 53283 29 493 56562 0.86 57055 30 478 54715 0.87 55193 31 459 51517 0.88 51976 32 462 52165 0.88 52627 33 530 63537 0.83 64067 34 417 51965 0.80 52382 35 482 53757 0.89 54239 36 467 54245 0.85 54712 37 431 48699 0.88 49130 38 464 51720 0.89 52184 39 421 47828 0.87 48249 40 438 47801 0.91 48239 41 398 45774 0.86 46172 42 466 43880 1.05 44346 43 442 44930 0.97 45372 44 438 44015 0.99 44453 45 387 41988 0.91 42375 46 363 41845 0.86 42208 47 433 43317 0.99 43750 48 455 41154 1.09 41609 49 404 43342 0.92 43746 50 392 41153 0.94 41545 51 406 39045 1.03 39451 52 406 38410 1.05 38816 53 393 42821 0.91 43214 54 364 39103 0.92 39467 55 355 38370 0.92 38725 56 344 38452 0.89 38796 57 390 37074 1.04 37464 58 351 36498 0.95 36849 59 338 37430 0.89 37768 60 387 36582 1.05 36969 61 364 36431 0.99 36795 62 371 37381 0.98 37752 63 377 36219 1.03 36596 64 288 33740 0.85 34028 65 323 35321 0.91 35644 66 300 32702 0.91 33002 67 331 35254 0.93 35585 68 291 34310 0.84 34601 69 336 33486 0.99 33822 70 314 33325 0.93 33639 71 301 33910 0.88 34211 72 241 31646 0.76 31887 73 310 30720 1.00 31030 74 271 32045 0.84 32316 75 230 30665 0.74 30895 76 274 29952 0.91 30226 77 267 30889 0.86 31156 78 289 28900 0.99 29189 79 252 29259 0.85 29511 80 260 28355 0.91 28615 81 291 27865 1.03 28156 82 263 26935 0.97 27198 83 259 27423 0.94 27682 84 234 26892 0.86 27126 85 248 29720 0.83 29968 86 256 26407 0.96 26663 87 242 26486 0.91 26728 88 243 24875 0.97 25118 89 247 26154 0.94 26401 90 258 26150 0.98 26408 91 227 27236 0.83 27463 92 244 25462 0.95 25706 93 223 24355 0.91 24578 94 213 24008 0.88 24221 95 224 24662 0.90 24886 96 246 23334 1.04 23580 97 201 23102 0.86 23303 98 181 23739 0.76 23920 99 175 0 100.00 175 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 17161 82372 17.24 99533 2 14213 66061 17.71 80274 3 14241 68426 17.23 82667 4 13968 66318 17.40 80286 5 2909 139130 2.05 142039 6 2978 187377 1.56 190355 7 3097 257927 1.19 261024 8 3302 251581 1.30 254883 9 3492 236198 1.46 239690 10 3238 242848 1.32 246086 11 3323 238764 1.37 242087 12 3276 223051 1.45 226327 13 3125 229805 1.34 232930 14 3040 229887 1.31 232927 15 3121 235567 1.31 238688 16 2862 227507 1.24 230369 17 3177 224684 1.39 227861 18 3038 224322 1.34 227360 19 2656 207817 1.26 210473 20 2967 220319 1.33 223286 21 2921 207716 1.39 210637 22 2847 199439 1.41 202286 23 2725 196099 1.37 198824 24 2585 189248 1.35 191833 25 2767 187858 1.45 190625 26 2681 186645 1.42 189326 27 2938 202504 1.43 205442 28 2542 189661 1.32 192203 29 2560 184245 1.37 186805 30 2621 178895 1.44 181516 31 2473 175792 1.39 178265 32 2522 170766 1.46 173288 33 2439 168972 1.42 171411 34 2486 168875 1.45 171361 35 2749 174485 1.55 177234 36 2526 172329 1.44 174855 37 2330 169604 1.36 171934 38 2506 180107 1.37 182613 39 2440 162450 1.48 164890 40 2415 171983 1.38 174398 41 2298 160507 1.41 162805 42 2394 165618 1.42 168012 43 2363 155738 1.49 158101 44 2196 154177 1.40 156373 45 2358 154514 1.50 156872 46 2130 155749 1.35 157879 47 2119 151844 1.38 153963 48 2225 149262 1.47 151487 49 2058 152800 1.33 154858 50 2074 148641 1.38 150715 51 2056 143883 1.41 145939 52 1925 137725 1.38 139650 53 1926 137267 1.38 139193 54 1868 134278 1.37 136146 55 1903 139992 1.34 141895 56 1867 134281 1.37 136148 57 1884 139009 1.34 140893 58 1788 132653 1.33 134441 59 1834 127115 1.42 128949 60 1809 131787 1.35 133596 61 1790 125924 1.40 127714 62 1721 124341 1.37 126062 63 1683 124913 1.33 126596 64 1703 120924 1.39 122627 65 1581 123452 1.26 125033 66 1735 117587 1.45 119322 67 1553 118503 1.29 120056 68 1654 122920 1.33 124574 69 1654 118852 1.37 120506 70 1544 113628 1.34 115172 71 1538 111992 1.35 113530 72 1550 112025 1.36 113575 73 1498 110616 1.34 112114 74 1482 111248 1.31 112730 75 1470 109322 1.33 110792 76 1377 105675 1.29 107052 77 1443 105436 1.35 106879 78 1473 105335 1.38 106808 79 1374 107240 1.27 108614 80 1377 103037 1.32 104414 81 1550 102975 1.48 104525 82 1371 101436 1.33 102807 83 1387 100658 1.36 102045 84 1461 99470 1.45 100931 85 1313 98235 1.32 99548 86 1334 97590 1.35 98924 87 1336 97133 1.36 98469 88 1223 92955 1.30 94178 89 1324 93097 1.40 94421 90 1306 92853 1.39 94159 91 1274 91884 1.37 93158 92 1226 91049 1.33 92275 93 1165 89854 1.28 91019 94 1134 89580 1.25 90714 95 1097 86993 1.25 88090 96 1166 85353 1.35 86519 97 1034 85626 1.19 86660 98 931 82191 1.12 83122 99 695 0 100.00 695