EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7500987 lines in total Total number of methylation call strings processed: 15001974 Final Cytosine Methylation Report ================================= Total number of C's analysed: 143389134 Total methylated C's in CpG context: 6473128 Total methylated C's in CHG context: 794893 Total methylated C's in CHH context: 2249885 Total C to T conversions in CpG context: 13251440 Total C to T conversions in CHG context: 29375321 Total C to T conversions in CHH context: 91244467 C methylated in CpG context: 32.8% C methylated in CHG context: 2.6% C methylated in CHH context: 2.4%