CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 127642 194697 39.60 322339 2 122565 214862 36.32 337427 3 118955 187245 38.85 306200 4 123869 148503 45.48 272372 5 121469 126033 49.08 247502 6 122285 105716 53.63 228001 7 137453 107267 56.17 244720 8 67268 115219 36.86 182487 9 60123 107226 35.93 167349 10 60380 104852 36.54 165232 11 62664 107875 36.74 170539 12 61020 110022 35.68 171042 13 60136 113495 34.63 173631 14 57192 112417 33.72 169609 15 56689 114069 33.20 170758 16 53510 113284 32.08 166794 17 50704 110422 31.47 161126 18 51940 112107 31.66 164047 19 51485 113560 31.19 165045 20 51918 114621 31.17 166539 21 52068 115029 31.16 167097 22 51171 113526 31.07 164697 23 50880 112809 31.08 163689 24 50201 113559 30.66 163760 25 49672 112145 30.70 161817 26 50008 110702 31.12 160710 27 49525 113348 30.41 162873 28 50694 112195 31.12 162889 29 49244 113992 30.17 163236 30 48514 113433 29.96 161947 31 49535 111270 30.80 160805 32 48698 108307 31.02 157005 33 48623 109029 30.84 157652 34 49526 107947 31.45 157473 35 49105 107862 31.28 156967 36 48860 108068 31.14 156928 37 46920 106945 30.49 153865 38 46315 105680 30.47 151995 39 47883 107184 30.88 155067 40 47406 105604 30.98 153010 41 47461 105186 31.09 152647 42 48111 106467 31.12 154578 43 47251 104625 31.11 151876 44 46611 103467 31.06 150078 45 46979 102910 31.34 149889 46 47582 104082 31.37 151664 47 46535 101633 31.41 148168 48 45795 100334 31.34 146129 49 46952 101775 31.57 148727 50 45420 101522 30.91 146942 51 45302 100969 30.97 146271 52 45672 104252 30.46 149924 53 44089 98662 30.89 142751 54 43271 97481 30.74 140752 55 42789 94419 31.19 137208 56 42371 93273 31.24 135644 57 42580 93729 31.24 136309 58 42065 93657 30.99 135722 59 42410 92399 31.46 134809 60 41232 92499 30.83 133731 61 41295 90356 31.37 131651 62 40226 90967 30.66 131193 63 39639 89348 30.73 128987 64 38988 88304 30.63 127292 65 39359 87732 30.97 127091 66 39622 87255 31.23 126877 67 39448 85144 31.66 124592 68 38508 84826 31.22 123334 69 37649 84306 30.87 121955 70 37032 83375 30.76 120407 71 36613 82167 30.82 118780 72 35753 81062 30.61 116815 73 35590 79582 30.90 115172 74 35181 79202 30.76 114383 75 34188 78392 30.37 112580 76 34284 76813 30.86 111097 77 34307 75870 31.14 110177 78 34459 76425 31.08 110884 79 33455 74288 31.05 107743 80 32924 75189 30.45 108113 81 32412 73642 30.56 106054 82 31665 72606 30.37 104271 83 32062 73150 30.47 105212 84 31594 72598 30.32 104192 85 31329 71423 30.49 102752 86 30487 69944 30.36 100431 87 29558 68786 30.06 98344 88 29773 67689 30.55 97462 89 29243 67403 30.26 96646 90 28878 67754 29.88 96632 91 28681 65867 30.33 94548 92 28182 65757 30.00 93939 93 28113 65407 30.06 93520 94 27647 64593 29.97 92240 95 27221 63681 29.95 90902 96 27575 65105 29.75 92680 97 26208 62354 29.59 88562 98 24932 58544 29.87 83476 99 19367 45466 29.87 64833 100 25320 58312 30.28 83632 101 23489 57657 28.95 81146 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 165121 250990 39.68 416111 2 96056 238931 28.67 334987 3 44569 232527 16.08 277096 4 23397 229487 9.25 252884 5 14981 208698 6.70 223679 6 15376 202846 7.05 218222 7 9227 244269 3.64 253496 8 4186 262823 1.57 267009 9 3542 251815 1.39 255357 10 3342 246478 1.34 249820 11 3674 248371 1.46 252045 12 3455 247742 1.38 251197 13 3246 240211 1.33 243457 14 3044 239982 1.25 243026 15 3055 245348 1.23 248403 16 2629 244282 1.06 246911 17 2752 242441 1.12 245193 18 2582 242354 1.05 244936 19 2623 240778 1.08 243401 20 2646 251290 1.04 253936 21 2674 253901 1.04 256575 22 2814 250484 1.11 253298 23 2805 254899 1.09 257704 24 2759 255391 1.07 258150 25 2966 248152 1.18 251118 26 3212 251133 1.26 254345 27 2759 252341 1.08 255100 28 2687 251122 1.06 253809 29 3037 253520 1.18 256557 30 2884 256379 1.11 259263 31 2754 248646 1.10 251400 32 3141 250210 1.24 253351 33 2818 250960 1.11 253778 34 2944 248348 1.17 251292 35 3227 246961 1.29 250188 36 3004 247518 1.20 250522 37 2850 241693 1.17 244543 38 3195 245261 1.29 248456 39 2841 242830 1.16 245671 40 2943 241525 1.20 244468 41 2883 239657 1.19 242540 42 2937 239816 1.21 242753 43 2939 235949 1.23 238888 44 3106 237537 1.29 240643 45 3144 235943 1.32 239087 46 3049 233579 1.29 236628 47 3129 231821 1.33 234950 48 2967 236046 1.24 239013 49 3072 228708 1.33 231780 50 3137 228840 1.35 231977 51 3143 229840 1.35 232983 52 3036 228246 1.31 231282 53 3163 224413 1.39 227576 54 3209 225445 1.40 228654 55 3037 220851 1.36 223888 56 3109 220885 1.39 223994 57 3107 219681 1.39 222788 58 3013 216280 1.37 219293 59 3123 215990 1.43 219113 60 3081 215899 1.41 218980 61 3030 211847 1.41 214877 62 3215 211636 1.50 214851 63 2981 209214 1.40 212195 64 3050 209499 1.43 212549 65 3378 206884 1.61 210262 66 3106 202224 1.51 205330 67 3060 196597 1.53 199657 68 3109 198017 1.55 201126 69 2895 196128 1.45 199023 70 2714 191337 1.40 194051 71 2728 190661 1.41 193389 72 2715 189390 1.41 192105 73 2721 185954 1.44 188675 74 3011 184182 1.61 187193 75 2631 184079 1.41 186710 76 2799 176567 1.56 179366 77 2862 178102 1.58 180964 78 2537 175547 1.42 178084 79 2679 171757 1.54 174436 80 2593 170659 1.50 173252 81 2543 168581 1.49 171124 82 2412 165822 1.43 168234 83 2776 168175 1.62 170951 84 2632 166414 1.56 169046 85 2427 165097 1.45 167524 86 2511 165304 1.50 167815 87 2708 163935 1.63 166643 88 2965 157047 1.85 160012 89 2418 158448 1.50 160866 90 2392 157979 1.49 160371 91 2379 154271 1.52 156650 92 2607 155034 1.65 157641 93 2471 152967 1.59 155438 94 2369 150512 1.55 152881 95 2453 148650 1.62 151103 96 2393 146456 1.61 148849 97 2358 133676 1.73 136034 98 2100 122804 1.68 124904 99 1311 79123 1.63 80434 100 1588 79990 1.95 81578 101 3255 133450 2.38 136705 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 189650 359472 34.54 549122 2 97098 381808 20.27 478906 3 52677 435375 10.79 488052 4 44569 461801 8.80 506370 5 42686 536077 7.38 578763 6 33760 577244 5.53 611004 7 28021 713660 3.78 741681 8 19135 767108 2.43 786243 9 14493 713244 1.99 727737 10 14337 698408 2.01 712745 11 17211 699632 2.40 716843 12 14244 705834 1.98 720078 13 15847 718134 2.16 733981 14 17411 733110 2.32 750521 15 14814 748567 1.94 763381 16 14425 755604 1.87 770029 17 16972 758927 2.19 775899 18 14315 782079 1.80 796394 19 14314 791304 1.78 805618 20 16734 815587 2.01 832321 21 14481 817353 1.74 831834 22 15532 817801 1.86 833333 23 17175 818070 2.06 835245 24 14505 815507 1.75 830012 25 16345 816325 1.96 832670 26 17337 821320 2.07 838657 27 14906 826553 1.77 841459 28 14698 826946 1.75 841644 29 17002 822475 2.03 839477 30 14453 813830 1.74 828283 31 15205 800671 1.86 815876 32 17146 800709 2.10 817855 33 14528 800625 1.78 815153 34 15919 802283 1.95 818202 35 17034 792559 2.10 809593 36 14609 797180 1.80 811789 37 13964 788552 1.74 802516 38 16441 787291 2.05 803732 39 14060 779918 1.77 793978 40 13913 776852 1.76 790765 41 16497 776489 2.08 792986 42 14504 779520 1.83 794024 43 15347 768172 1.96 783519 44 16168 769732 2.06 785900 45 14362 758355 1.86 772717 46 14150 755768 1.84 769918 47 16049 747525 2.10 763574 48 13444 746353 1.77 759797 49 13877 734712 1.85 748589 50 15246 726397 2.06 741643 51 13007 717166 1.78 730173 52 13966 709668 1.93 723634 53 15501 700919 2.16 716420 54 13521 699929 1.90 713450 55 13649 693890 1.93 707539 56 15331 689605 2.17 704936 57 12863 693499 1.82 706362 58 13345 686860 1.91 700205 59 15173 686924 2.16 702097 60 12453 672716 1.82 685169 61 13458 666889 1.98 680347 62 14456 658610 2.15 673066 63 12589 652467 1.89 665056 64 13162 644619 2.00 657781 65 14187 636924 2.18 651111 66 11979 631534 1.86 643513 67 12142 625975 1.90 638117 68 13932 620794 2.19 634726 69 11508 614651 1.84 626159 70 11915 610333 1.91 622248 71 13389 604415 2.17 617804 72 11582 600602 1.89 612184 73 12517 587956 2.08 600473 74 12892 584999 2.16 597891 75 11159 580850 1.88 592009 76 11808 573547 2.02 585355 77 12979 569190 2.23 582169 78 10683 564207 1.86 574890 79 11170 558180 1.96 569350 80 12517 553515 2.21 566032 81 10742 544529 1.93 555271 82 11468 538824 2.08 550292 83 12683 536732 2.31 549415 84 11059 529140 2.05 540199 85 10464 522041 1.97 532505 86 11710 515817 2.22 527527 87 11251 509085 2.16 520336 88 11926 497294 2.34 509220 89 11594 500509 2.26 512103 90 9885 498475 1.94 508360 91 10271 489250 2.06 499521 92 10710 487033 2.15 497743 93 9514 483811 1.93 493325 94 9687 476533 1.99 486220 95 10950 467681 2.29 478631 96 8945 459403 1.91 468348 97 8938 445244 1.97 454182 98 9691 413698 2.29 423389 99 5692 286282 1.95 291974 100 6400 252611 2.47 259011 101 9685 418321 2.26 428006 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 91511 85833 51.60 177344 2 77347 69710 52.60 147057 3 83838 79838 51.22 163676 4 74774 87112 46.19 161886 5 33408 109498 23.38 142906 6 21006 61015 25.61 82021 7 17926 64635 21.71 82561 8 18812 58330 24.39 77142 9 16562 51132 24.47 67694 10 17841 56387 24.04 74228 11 18852 55254 25.44 74106 12 18263 53292 25.52 71555 13 18506 51272 26.52 69778 14 19477 51816 27.32 71293 15 18910 47905 28.30 66815 16 17903 45856 28.08 63759 17 21440 50795 29.68 72235 18 20338 48875 29.38 69213 19 20081 46781 30.03 66862 20 18135 45519 28.49 63654 21 18856 43808 30.09 62664 22 19287 45352 29.84 64639 23 17954 43389 29.27 61343 24 16691 40486 29.19 57177 25 18790 44022 29.91 62812 26 17270 41224 29.52 58494 27 18191 42378 30.03 60569 28 16976 40005 29.79 56981 29 17763 41079 30.19 58842 30 16900 38401 30.56 55301 31 16190 39056 29.31 55246 32 15804 36993 29.93 52797 33 17714 38190 31.69 55904 34 16364 39735 29.17 56099 35 20404 42515 32.43 62919 36 16638 37449 30.76 54087 37 17165 38721 30.71 55886 38 15408 36556 29.65 51964 39 16197 36630 30.66 52827 40 17251 36136 32.31 53387 41 15141 35665 29.80 50806 42 15479 36299 29.89 51778 43 15361 35532 30.18 50893 44 14548 34593 29.60 49141 45 18134 38516 32.01 56650 46 13894 31984 30.28 45878 47 14215 32433 30.47 46648 48 14369 32380 30.74 46749 49 13873 32665 29.81 46538 50 13282 31274 29.81 44556 51 13160 30627 30.05 43787 52 13037 30874 29.69 43911 53 13583 30494 30.82 44077 54 13588 30274 30.98 43862 55 13344 30493 30.44 43837 56 12492 29602 29.68 42094 57 12970 29607 30.46 42577 58 12773 28939 30.62 41712 59 12033 27769 30.23 39802 60 12488 28276 30.63 40764 61 11094 26824 29.26 37918 62 11372 26810 29.78 38182 63 12227 26439 31.62 38666 64 11503 26163 30.54 37666 65 11229 24990 31.00 36219 66 11738 25662 31.39 37400 67 10918 26369 29.28 37287 68 12143 27559 30.59 39702 69 10604 24413 30.28 35017 70 10272 24240 29.76 34512 71 10988 23479 31.88 34467 72 9958 22865 30.34 32823 73 10180 23501 30.22 33681 74 9113 22422 28.90 31535 75 9418 22003 29.97 31421 76 9682 21807 30.75 31489 77 9372 21626 30.23 30998 78 9403 21822 30.11 31225 79 8803 21106 29.43 29909 80 8841 20993 29.63 29834 81 8769 20910 29.55 29679 82 8795 20934 29.58 29729 83 8972 20158 30.80 29130 84 9927 21793 31.30 31720 85 8470 20155 29.59 28625 86 8207 19864 29.24 28071 87 8416 19024 30.67 27440 88 8313 19080 30.35 27393 89 8634 19596 30.58 28230 90 8556 19228 30.79 27784 91 7908 18833 29.57 26741 92 7719 18318 29.65 26037 93 7900 18181 30.29 26081 94 7969 18308 30.33 26277 95 7964 17954 30.73 25918 96 7873 17773 30.70 25646 97 8378 18616 31.04 26994 98 7430 16538 31.00 23968 99 6714 0 100.00 6714 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22737 111930 16.88 134667 2 22231 110151 16.79 132382 3 19956 109869 15.37 129825 4 21493 120128 15.18 141621 5 2380 217432 1.08 219812 6 1868 266392 0.70 268260 7 1184 148593 0.79 149777 8 1199 156782 0.76 157981 9 966 130726 0.73 131692 10 1038 125888 0.82 126926 11 1475 172934 0.85 174409 12 1153 134313 0.85 135466 13 1106 132179 0.83 133285 14 1117 125272 0.88 126389 15 1088 121465 0.89 122553 16 1026 113600 0.90 114626 17 1113 121447 0.91 122560 18 1251 107552 1.15 108803 19 1049 104853 0.99 105902 20 961 104058 0.92 105019 21 1149 99509 1.14 100658 22 998 108347 0.91 109345 23 1049 108377 0.96 109426 24 886 96137 0.91 97023 25 966 98196 0.97 99162 26 990 102143 0.96 103133 27 879 95947 0.91 96826 28 817 92143 0.88 92960 29 966 97865 0.98 98831 30 896 95259 0.93 96155 31 808 90123 0.89 90931 32 854 92373 0.92 93227 33 897 110350 0.81 111247 34 777 89744 0.86 90521 35 855 93150 0.91 94005 36 813 94428 0.85 95241 37 731 85157 0.85 85888 38 759 90459 0.83 91218 39 785 83399 0.93 84184 40 783 83678 0.93 84461 41 739 80624 0.91 81363 42 755 76792 0.97 77547 43 719 78978 0.90 79697 44 719 77895 0.91 78614 45 664 73748 0.89 74412 46 691 73686 0.93 74377 47 699 75993 0.91 76692 48 731 72431 1.00 73162 49 706 75163 0.93 75869 50 715 72354 0.98 73069 51 626 68864 0.90 69490 52 632 67772 0.92 68404 53 744 76156 0.97 76900 54 712 69667 1.01 70379 55 633 67786 0.93 68419 56 640 68689 0.92 69329 57 737 65291 1.12 66028 58 643 63382 1.00 64025 59 637 66373 0.95 67010 60 721 63653 1.12 64374 61 657 64323 1.01 64980 62 667 65286 1.01 65953 63 615 64514 0.94 65129 64 552 60163 0.91 60715 65 655 62020 1.05 62675 66 579 58324 0.98 58903 67 623 62924 0.98 63547 68 519 60469 0.85 60988 69 565 60035 0.93 60600 70 565 58784 0.95 59349 71 542 60524 0.89 61066 72 517 56603 0.91 57120 73 526 54968 0.95 55494 74 501 56882 0.87 57383 75 461 55008 0.83 55469 76 464 53029 0.87 53493 77 515 56049 0.91 56564 78 445 51745 0.85 52190 79 489 52383 0.92 52872 80 484 50892 0.94 51376 81 441 49611 0.88 50052 82 438 48539 0.89 48977 83 450 49168 0.91 49618 84 477 47564 0.99 48041 85 468 52646 0.88 53114 86 437 47552 0.91 47989 87 425 46667 0.90 47092 88 411 45237 0.90 45648 89 431 47172 0.91 47603 90 476 46147 1.02 46623 91 406 48485 0.83 48891 92 426 45651 0.92 46077 93 404 43924 0.91 44328 94 418 43307 0.96 43725 95 405 44173 0.91 44578 96 454 41948 1.07 42402 97 391 41422 0.94 41813 98 330 41159 0.80 41489 99 269 0 100.00 269 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30638 141241 17.83 171879 2 25125 113776 18.09 138901 3 25742 118085 17.90 143827 4 24806 115811 17.64 140617 5 5861 239116 2.39 244977 6 5747 326295 1.73 332042 7 6255 447688 1.38 453943 8 6698 437486 1.51 444184 9 7057 410841 1.69 417898 10 6335 422042 1.48 428377 11 6352 415733 1.50 422085 12 6524 389271 1.65 395795 13 6288 402300 1.54 408588 14 6031 401036 1.48 407067 15 6160 413201 1.47 419361 16 5816 397479 1.44 403295 17 5933 395130 1.48 401063 18 5920 391801 1.49 397721 19 5432 363172 1.47 368604 20 5855 385214 1.50 391069 21 5589 364396 1.51 369985 22 5622 351470 1.57 357092 23 5485 345646 1.56 351131 24 5238 331538 1.56 336776 25 5442 331180 1.62 336622 26 5142 329818 1.54 334960 27 5597 353976 1.56 359573 28 5040 332094 1.49 337134 29 5200 324244 1.58 329444 30 5313 315077 1.66 320390 31 4867 310697 1.54 315564 32 4814 301868 1.57 306682 33 4865 300239 1.59 305104 34 4878 297917 1.61 302795 35 5257 308791 1.67 314048 36 4835 302603 1.57 307438 37 4620 299502 1.52 304122 38 5071 318066 1.57 323137 39 4843 287126 1.66 291969 40 4638 302641 1.51 307279 41 4584 283689 1.59 288273 42 4597 291354 1.55 295951 43 4606 275334 1.65 279940 44 4198 271762 1.52 275960 45 4542 273898 1.63 278440 46 4227 277478 1.50 281705 47 4263 269759 1.56 274022 48 4281 264571 1.59 268852 49 4047 272545 1.46 276592 50 4156 264529 1.55 268685 51 4137 258268 1.58 262405 52 3898 245764 1.56 249662 53 3760 244325 1.52 248085 54 3612 239937 1.48 243549 55 3806 250073 1.50 253879 56 3622 239276 1.49 242898 57 3753 248660 1.49 252413 58 3541 236258 1.48 239799 59 3556 228025 1.54 231581 60 3857 236060 1.61 239917 61 3456 225642 1.51 229098 62 3375 222576 1.49 225951 63 3397 224532 1.49 227929 64 3325 215523 1.52 218848 65 3191 219729 1.43 222920 66 3395 210524 1.59 213919 67 3007 210984 1.41 213991 68 3286 219858 1.47 223144 69 3339 212162 1.55 215501 70 2992 202809 1.45 205801 71 3140 201313 1.54 204453 72 3162 200514 1.55 203676 73 2988 198153 1.49 201141 74 2790 199595 1.38 202385 75 2954 197472 1.47 200426 76 2723 189923 1.41 192646 77 2869 188506 1.50 191375 78 3109 190243 1.61 193352 79 2792 193782 1.42 196574 80 2830 185939 1.50 188769 81 2922 185692 1.55 188614 82 2778 182407 1.50 185185 83 2724 181222 1.48 183946 84 2829 178855 1.56 181684 85 2523 177108 1.40 179631 86 2576 176478 1.44 179054 87 2629 174524 1.48 177153 88 2459 168664 1.44 171123 89 2655 168083 1.56 170738 90 2622 167194 1.54 169816 91 2558 165894 1.52 168452 92 2474 163423 1.49 165897 93 2343 161923 1.43 164266 94 2315 159655 1.43 161970 95 2340 157589 1.46 159929 96 2216 154262 1.42 156478 97 1986 154287 1.27 156273 98 1826 147692 1.22 149518 99 1308 0 100.00 1308