/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R2_001_val_2.fq.gz
Data processed at 05:18 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
25100695
Paired-end alignments with a unique best hit
10396122
Pairs without alignments under any condition
11933311
Pairs that did not map uniquely
2771262
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
292335065
Methylated C's in CpG context
12585999
Methylated C's in CHG context
1652750
Methylated C's in CHH context
4231978
Methylated C's in Unknown context
79283
Unmethylated C's in CpG context
28671686
Unmethylated C's in CHG context
61623093
Unmethylated C's in CHH context
183569559
Unmethylated C's in Unknown context
639910
Percentage methylation (CpG context)
30.5%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5128955
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5267166
original bottom strand
Deduplication
Alignments analysed
10396121
Unique alignments
7500987
Duplicates removed
2895134
Duplicated alignments were found at 1778247 different positions