EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4367077 lines in total Total number of methylation call strings processed: 8734154 Final Cytosine Methylation Report ================================= Total number of C's analysed: 88024093 Total methylated C's in CpG context: 4047323 Total methylated C's in CHG context: 479419 Total methylated C's in CHH context: 1871691 Total C to T conversions in CpG context: 8070663 Total C to T conversions in CHG context: 17975035 Total C to T conversions in CHH context: 55579962 C methylated in CpG context: 33.4% C methylated in CHG context: 2.6% C methylated in CHH context: 3.3%