CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 122800 173319 41.47 296119 2 120382 191744 38.57 312126 3 120244 182062 39.78 302306 4 127866 162693 44.01 290559 5 125965 140973 47.19 266938 6 126068 116500 51.97 242568 7 138877 114376 54.84 253253 8 70378 131790 34.81 202168 9 63434 122967 34.03 186401 10 63481 120396 34.52 183877 11 65869 123964 34.70 189833 12 63744 124627 33.84 188371 13 63356 126410 33.39 189766 14 60246 128544 31.91 188790 15 59202 129316 31.40 188518 16 55727 129818 30.03 185545 17 53227 127100 29.52 180327 18 54311 129142 29.60 183453 19 53267 129216 29.19 182483 20 54121 131875 29.10 185996 21 53735 131771 28.97 185506 22 52905 129818 28.95 182723 23 52543 129168 28.92 181711 24 51934 129663 28.60 181597 25 51153 127670 28.61 178823 26 51300 127438 28.70 178738 27 51154 130275 28.20 181429 28 51926 129856 28.56 181782 29 50768 128037 28.39 178805 30 50379 128847 28.11 179226 31 51501 126886 28.87 178387 32 50683 124572 28.92 175255 33 50652 126126 28.65 176778 34 51541 125966 29.04 177507 35 50730 124777 28.90 175507 36 50468 126038 28.59 176506 37 49002 123889 28.34 172891 38 48342 121564 28.45 169906 39 49441 123536 28.58 172977 40 48835 121388 28.69 170223 41 48966 120882 28.83 169848 42 49820 123015 28.83 172835 43 48627 121149 28.64 169776 44 48415 120215 28.71 168630 45 48602 118344 29.11 166946 46 48699 118874 29.06 167573 47 47568 116560 28.98 164128 48 47573 116681 28.96 164254 49 47960 116285 29.20 164245 50 46132 116561 28.36 162693 51 46805 115499 28.84 162304 52 47270 117172 28.75 164442 53 45585 112654 28.81 158239 54 44674 111600 28.59 156274 55 44358 108861 28.95 153219 56 43771 108227 28.80 151998 57 43653 109945 28.42 153598 58 43560 108807 28.59 152367 59 43308 105962 29.01 149270 60 42048 106504 28.31 148552 61 42464 104711 28.85 147175 62 41329 104092 28.42 145421 63 40598 102785 28.31 143383 64 39877 101859 28.13 141736 65 40482 101210 28.57 141692 66 40389 101308 28.50 141697 67 39953 98802 28.79 138755 68 38803 99201 28.12 138004 69 39309 97572 28.72 136881 70 38530 96405 28.55 134935 71 37299 94349 28.33 131648 72 37031 94375 28.18 131406 73 36314 92829 28.12 129143 74 35998 91767 28.18 127765 75 35013 91396 27.70 126409 76 35039 89581 28.12 124620 77 34985 88818 28.26 123803 78 35408 89628 28.32 125036 79 34116 87152 28.13 121268 80 33607 87439 27.76 121046 81 33216 86839 27.67 120055 82 32224 84854 27.52 117078 83 32756 84458 27.95 117214 84 32213 83892 27.74 116105 85 32019 82666 27.92 114685 86 31147 81487 27.65 112634 87 29987 80329 27.18 110316 88 30058 79242 27.50 109300 89 29575 78584 27.34 108159 90 29518 78622 27.30 108140 91 29150 77054 27.45 106204 92 28721 76226 27.37 104947 93 28614 76640 27.19 105254 94 28223 75159 27.30 103382 95 27960 74588 27.27 102548 96 27560 74435 27.02 101995 97 26804 72134 27.09 98938 98 25268 67830 27.14 93098 99 19800 52832 27.26 72632 100 25593 67369 27.53 92962 101 24073 67018 26.43 91091 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 144547 280581 34.00 425128 2 82145 273056 23.13 355201 3 36899 265710 12.19 302609 4 20257 258330 7.27 278587 5 13498 229759 5.55 243257 6 10657 217181 4.68 227838 7 8796 267117 3.19 275913 8 4278 288116 1.46 292394 9 3676 274395 1.32 278071 10 3805 267539 1.40 271344 11 3726 268641 1.37 272367 12 3652 266999 1.35 270651 13 3313 260694 1.25 264007 14 3072 259788 1.17 262860 15 3021 266124 1.12 269145 16 2832 267399 1.05 270231 17 2732 263677 1.03 266409 18 2747 262434 1.04 265181 19 2716 261874 1.03 264590 20 2751 273594 1.00 276345 21 2815 276107 1.01 278922 22 2826 272454 1.03 275280 23 2967 275759 1.06 278726 24 2808 277247 1.00 280055 25 3062 271553 1.12 274615 26 3109 272412 1.13 275521 27 2919 275710 1.05 278629 28 2802 274655 1.01 277457 29 3019 276893 1.08 279912 30 3099 278486 1.10 281585 31 3064 271322 1.12 274386 32 3350 273383 1.21 276733 33 3159 275535 1.13 278694 34 3200 269716 1.17 272916 35 3386 269832 1.24 273218 36 3134 271199 1.14 274333 37 3015 264170 1.13 267185 38 3218 267949 1.19 271167 39 3187 264668 1.19 267855 40 3098 264341 1.16 267439 41 3258 262606 1.23 265864 42 3209 261847 1.21 265056 43 3309 256958 1.27 260267 44 3262 258744 1.25 262006 45 3352 257054 1.29 260406 46 3275 253987 1.27 257262 47 3315 253306 1.29 256621 48 3264 256421 1.26 259685 49 3204 249292 1.27 252496 50 3539 249021 1.40 252560 51 3202 250327 1.26 253529 52 3336 248892 1.32 252228 53 3301 243160 1.34 246461 54 3322 244384 1.34 247706 55 3312 239671 1.36 242983 56 3258 241821 1.33 245079 57 3269 237961 1.36 241230 58 3300 235723 1.38 239023 59 3231 234603 1.36 237834 60 3255 234398 1.37 237653 61 3195 228704 1.38 231899 62 3238 229346 1.39 232584 63 3171 226619 1.38 229790 64 3230 224357 1.42 227587 65 3350 223642 1.48 226992 66 3273 218443 1.48 221716 67 3099 214284 1.43 217383 68 3334 215628 1.52 218962 69 3183 211925 1.48 215108 70 3070 207176 1.46 210246 71 3009 206998 1.43 210007 72 2868 205757 1.37 208625 73 2881 202538 1.40 205419 74 3005 201503 1.47 204508 75 2898 200107 1.43 203005 76 2943 192581 1.51 195524 77 3018 193776 1.53 196794 78 2800 191255 1.44 194055 79 2861 186515 1.51 189376 80 2658 186142 1.41 188800 81 2670 184256 1.43 186926 82 2696 180355 1.47 183051 83 2794 182928 1.50 185722 84 2963 181201 1.61 184164 85 2600 178545 1.44 181145 86 2791 176428 1.56 179219 87 2997 176653 1.67 179650 88 3284 169128 1.90 172412 89 2562 171076 1.48 173638 90 2594 170457 1.50 173051 91 2611 167583 1.53 170194 92 2528 169409 1.47 171937 93 2671 165741 1.59 168412 94 2554 162523 1.55 165077 95 2539 160148 1.56 162687 96 2617 158191 1.63 160808 97 2571 145725 1.73 148296 98 2169 133407 1.60 135576 99 1456 86859 1.65 88315 100 1674 88369 1.86 90043 101 3510 144514 2.37 148024 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 210287 412160 33.78 622447 2 103507 440325 19.03 543832 3 53869 478854 10.11 532723 4 43957 510088 7.93 554045 5 40813 592175 6.45 632988 6 33128 639873 4.92 673001 7 28628 786432 3.51 815060 8 18160 845546 2.10 863706 9 14206 780951 1.79 795157 10 13857 758695 1.79 772552 11 15962 760201 2.06 776163 12 13577 761723 1.75 775300 13 14793 770788 1.88 785581 14 15899 791191 1.97 807090 15 13784 807924 1.68 821708 16 13294 815644 1.60 828938 17 15411 823544 1.84 838955 18 13555 849280 1.57 862835 19 13697 864276 1.56 877973 20 15498 890093 1.71 905591 21 13562 891181 1.50 904743 22 14417 892874 1.59 907291 23 15747 891873 1.73 907620 24 13806 890192 1.53 903998 25 15542 890777 1.71 906319 26 15754 897338 1.73 913092 27 14042 901366 1.53 915408 28 13784 902301 1.50 916085 29 15891 898415 1.74 914306 30 13966 890283 1.54 904249 31 14150 877461 1.59 891611 32 16067 872564 1.81 888631 33 13610 874717 1.53 888327 34 14705 875724 1.65 890429 35 15491 865220 1.76 880711 36 13849 873919 1.56 887768 37 13345 863964 1.52 877309 38 15149 860598 1.73 875747 39 13195 852633 1.52 865828 40 13451 846334 1.56 859785 41 14930 845607 1.73 860537 42 13494 843693 1.57 857187 43 13843 834221 1.63 848064 44 14532 836247 1.71 850779 45 13585 824814 1.62 838399 46 13458 822829 1.61 836287 47 14359 816761 1.73 831120 48 12858 812130 1.56 824988 49 13105 802653 1.61 815758 50 14266 795215 1.76 809481 51 12618 786014 1.58 798632 52 12905 777420 1.63 790325 53 13930 767478 1.78 781408 54 12787 763047 1.65 775834 55 12636 756334 1.64 768970 56 13739 752116 1.79 765855 57 12194 752727 1.59 764921 58 12460 748600 1.64 761060 59 13940 747015 1.83 760955 60 11721 736035 1.57 747756 61 12486 727974 1.69 740460 62 13103 717154 1.79 730257 63 11752 710164 1.63 721916 64 12276 702562 1.72 714838 65 13116 697492 1.85 710608 66 11475 691359 1.63 702834 67 11722 685033 1.68 696755 68 12565 678971 1.82 691536 69 10849 673807 1.58 684656 70 11233 666371 1.66 677604 71 12079 659667 1.80 671746 72 10726 656124 1.61 666850 73 11558 644028 1.76 655586 74 11672 641306 1.79 652978 75 10527 634896 1.63 645423 76 11277 629093 1.76 640370 77 11843 623914 1.86 635757 78 9900 619014 1.57 628914 79 10751 611257 1.73 622008 80 11390 606597 1.84 617987 81 10241 600236 1.68 610477 82 10655 591166 1.77 601821 83 11377 589782 1.89 601159 84 10262 581247 1.73 591509 85 9945 572550 1.71 582495 86 10745 565492 1.86 576237 87 10706 556110 1.89 566816 88 11724 542862 2.11 554586 89 10632 548159 1.90 558791 90 9205 545383 1.66 554588 91 9386 537173 1.72 546559 92 9714 532377 1.79 542091 93 8934 527221 1.67 536155 94 9078 519151 1.72 528229 95 9884 511666 1.90 521550 96 8821 503089 1.72 511910 97 8574 489141 1.72 497715 98 8894 453290 1.92 462184 99 5483 313196 1.72 318679 100 6049 278154 2.13 284203 101 9207 456960 1.98 466167 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 90226 97624 48.03 187850 2 76685 81230 48.56 157915 3 83163 93031 47.20 176194 4 77567 103850 42.76 181417 5 34260 134848 20.26 169108 6 20625 73007 22.03 93632 7 18048 74804 19.44 92852 8 18776 69115 21.36 87891 9 16456 61334 21.15 77790 10 17971 67121 21.12 85092 11 18976 65108 22.57 84084 12 18546 61642 23.13 80188 13 18652 60828 23.47 79480 14 19857 61885 24.29 81742 15 19668 56834 25.71 76502 16 18512 54767 25.26 73279 17 21596 59173 26.74 80769 18 20899 58328 26.38 79227 19 19930 56546 26.06 76476 20 18443 53879 25.50 72322 21 19518 52131 27.24 71649 22 19308 52893 26.74 72201 23 18360 52075 26.07 70435 24 16891 48993 25.64 65884 25 18803 51821 26.62 70624 26 17263 48894 26.09 66157 27 18363 50063 26.84 68426 28 17029 47275 26.48 64304 29 17898 49023 26.74 66921 30 17078 45704 27.20 62782 31 16337 46007 26.20 62344 32 16019 43559 26.89 59578 33 17868 44770 28.53 62638 34 16645 46916 26.19 63561 35 20186 50017 28.75 70203 36 16798 44236 27.52 61034 37 17198 45199 27.56 62397 38 15438 42989 26.42 58427 39 16482 42572 27.91 59054 40 17444 42636 29.03 60080 41 15502 41656 27.12 57158 42 15646 43216 26.58 58862 43 15500 42172 26.88 57672 44 14669 40366 26.65 55035 45 18052 44506 28.86 62558 46 13996 37423 27.22 51419 47 14396 38158 27.39 52554 48 14232 38361 27.06 52593 49 14077 38737 26.65 52814 50 13132 37146 26.12 50278 51 13165 36048 26.75 49213 52 13291 36289 26.81 49580 53 13541 35528 27.60 49069 54 13464 35980 27.23 49444 55 13550 35946 27.38 49496 56 12484 34241 26.72 46725 57 12954 35233 26.88 48187 58 12842 33906 27.47 46748 59 12304 32412 27.52 44716 60 12415 33116 27.27 45531 61 11256 31290 26.46 42546 62 11555 31620 26.76 43175 63 12231 31349 28.07 43580 64 11452 30815 27.09 42267 65 11293 29439 27.73 40732 66 11758 30252 27.99 42010 67 10848 30940 25.96 41788 68 11962 32106 27.14 44068 69 10978 28169 28.04 39147 70 10071 28125 26.37 38196 71 10815 27280 28.39 38095 72 10020 27200 26.92 37220 73 10007 27517 26.67 37524 74 9137 26177 25.87 35314 75 9110 25916 26.01 35026 76 9477 25190 27.34 34667 77 9410 25431 27.01 34841 78 9188 25459 26.52 34647 79 8824 24978 26.10 33802 80 8728 24617 26.17 33345 81 8586 24265 26.14 32851 82 8855 24467 26.57 33322 83 8798 23693 27.08 32491 84 9640 25846 27.17 35486 85 8413 23462 26.39 31875 86 8393 22798 26.91 31191 87 8238 22371 26.91 30609 88 8180 22494 26.67 30674 89 8694 23136 27.31 31830 90 8415 22408 27.30 30823 91 7928 22050 26.45 29978 92 7695 21621 26.25 29316 93 7820 21265 26.89 29085 94 8114 21575 27.33 29689 95 7772 21326 26.71 29098 96 7708 21214 26.65 28922 97 8161 22205 26.88 30366 98 7306 19778 26.98 27084 99 6561 0 100.00 6561 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24690 121467 16.89 146157 2 25081 123713 16.86 148794 3 22636 123624 15.48 146260 4 24827 131624 15.87 156451 5 2506 244561 1.01 247067 6 2009 297860 0.67 299869 7 1202 163784 0.73 164986 8 1179 171357 0.68 172536 9 1013 143053 0.70 144066 10 1031 137512 0.74 138543 11 1479 184471 0.80 185950 12 1167 146839 0.79 148006 13 1154 144454 0.79 145608 14 1140 137628 0.82 138768 15 1098 132470 0.82 133568 16 1008 123628 0.81 124636 17 1120 131539 0.84 132659 18 1195 117892 1.00 119087 19 1019 114969 0.88 115988 20 964 113005 0.85 113969 21 1120 109175 1.02 110295 22 1105 117548 0.93 118653 23 987 116972 0.84 117959 24 904 105530 0.85 106434 25 940 106439 0.88 107379 26 962 111583 0.85 112545 27 949 105175 0.89 106124 28 817 99710 0.81 100527 29 954 105692 0.89 106646 30 958 103366 0.92 104324 31 807 98018 0.82 98825 32 852 100347 0.84 101199 33 887 118010 0.75 118897 34 816 97693 0.83 98509 35 858 100569 0.85 101427 36 847 101995 0.82 102842 37 762 92647 0.82 93409 38 864 97265 0.88 98129 39 822 90613 0.90 91435 40 803 90862 0.88 91665 41 797 87548 0.90 88345 42 742 83509 0.88 84251 43 749 86479 0.86 87228 44 735 85398 0.85 86133 45 693 80131 0.86 80824 46 678 80900 0.83 81578 47 773 82108 0.93 82881 48 727 79898 0.90 80625 49 680 82461 0.82 83141 50 736 78743 0.93 79479 51 647 75166 0.85 75813 52 704 73971 0.94 74675 53 738 81271 0.90 82009 54 676 75068 0.89 75744 55 622 73409 0.84 74031 56 678 73797 0.91 74475 57 730 70522 1.02 71252 58 631 70113 0.89 70744 59 625 71073 0.87 71698 60 727 69187 1.04 69914 61 635 68668 0.92 69303 62 648 70084 0.92 70732 63 640 69042 0.92 69682 64 593 65383 0.90 65976 65 575 66216 0.86 66791 66 542 63326 0.85 63868 67 580 67455 0.85 68035 68 596 64618 0.91 65214 69 561 64578 0.86 65139 70 571 63628 0.89 64199 71 583 64724 0.89 65307 72 519 60503 0.85 61022 73 500 59456 0.83 59956 74 532 61044 0.86 61576 75 476 58423 0.81 58899 76 489 56731 0.85 57220 77 485 59054 0.81 59539 78 492 55936 0.87 56428 79 474 55444 0.85 55918 80 459 54621 0.83 55080 81 456 52690 0.86 53146 82 445 52039 0.85 52484 83 473 52356 0.90 52829 84 426 51233 0.82 51659 85 464 56603 0.81 57067 86 459 50728 0.90 51187 87 408 50967 0.79 51375 88 435 48145 0.90 48580 89 467 50715 0.91 51182 90 513 49810 1.02 50323 91 479 51988 0.91 52467 92 420 48812 0.85 49232 93 433 46740 0.92 47173 94 392 45662 0.85 46054 95 431 48028 0.89 48459 96 456 45037 1.00 45493 97 427 44843 0.94 45270 98 371 43749 0.84 44120 99 241 0 100.00 241 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 34236 161047 17.53 195283 2 27599 131257 17.37 158856 3 27612 133593 17.13 161205 4 26992 129481 17.25 156473 5 5310 262744 1.98 268054 6 5091 357348 1.40 362439 7 5789 492782 1.16 498571 8 6073 482041 1.24 488114 9 6262 454533 1.36 460795 10 5880 464536 1.25 470416 11 5974 456298 1.29 462272 12 5915 426838 1.37 432753 13 5638 441309 1.26 446947 14 5646 440494 1.27 446140 15 5592 451807 1.22 457399 16 5156 431861 1.18 437017 17 5630 429726 1.29 435356 18 5546 429658 1.27 435204 19 5017 397809 1.25 402826 20 5475 419069 1.29 424544 21 5257 396963 1.31 402220 22 5064 383577 1.30 388641 23 4957 376436 1.30 381393 24 4779 362827 1.30 367606 25 5052 361153 1.38 366205 26 4853 357254 1.34 362107 27 5123 384583 1.31 389706 28 4551 362768 1.24 367319 29 4990 352618 1.40 357608 30 4674 344799 1.34 349473 31 4483 339781 1.30 344264 32 4269 329936 1.28 334205 33 4420 326016 1.34 330436 34 4472 324223 1.36 328695 35 4926 334286 1.45 339212 36 4281 329039 1.28 333320 37 4281 327732 1.29 332013 38 4534 342540 1.31 347074 39 4418 313026 1.39 317444 40 4240 328790 1.27 333030 41 4250 308784 1.36 313034 42 4223 316378 1.32 320601 43 4166 299618 1.37 303784 44 3883 296827 1.29 300710 45 4124 297384 1.37 301508 46 3847 301351 1.26 305198 47 3865 293108 1.30 296973 48 3893 287273 1.34 291166 49 3812 293474 1.28 297286 50 3715 285764 1.28 289479 51 3741 279757 1.32 283498 52 3462 267059 1.28 270521 53 3530 265460 1.31 268990 54 3366 260484 1.28 263850 55 3553 269726 1.30 273279 56 3412 259579 1.30 262991 57 3437 268400 1.26 271837 58 3205 257697 1.23 260902 59 3387 247898 1.35 251285 60 3508 256053 1.35 259561 61 3153 244110 1.28 247263 62 3119 240799 1.28 243918 63 3142 242830 1.28 245972 64 3029 234437 1.28 237466 65 3101 237967 1.29 241068 66 3031 228531 1.31 231562 67 2875 229417 1.24 232292 68 3084 237353 1.28 240437 69 3012 229925 1.29 232937 70 2710 220582 1.21 223292 71 2973 217389 1.35 220362 72 2790 217168 1.27 219958 73 2757 214551 1.27 217308 74 2763 215242 1.27 218005 75 2689 213671 1.24 216360 76 2592 204908 1.25 207500 77 2668 203306 1.30 205974 78 2754 204545 1.33 207299 79 2568 207690 1.22 210258 80 2654 200373 1.31 203027 81 2630 200256 1.30 202886 82 2542 196773 1.28 199315 83 2573 195259 1.30 197832 84 2608 193631 1.33 196239 85 2392 191653 1.23 194045 86 2484 189782 1.29 192266 87 2403 187637 1.26 190040 88 2240 181155 1.22 183395 89 2333 181408 1.27 183741 90 2432 179827 1.33 182259 91 2209 178474 1.22 180683 92 2223 176084 1.25 178307 93 2109 174726 1.19 176835 94 2111 173005 1.21 175116 95 2170 168709 1.27 170879 96 2119 165811 1.26 167930 97 1949 165858 1.16 167807 98 1737 158417 1.08 160154 99 1238 0 100.00 1238