CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 133774 180244 42.60 314018 2 130744 199893 39.54 330637 3 124146 170714 42.10 294860 4 130458 135007 49.14 265465 5 125768 117182 51.77 242950 6 129413 97403 57.06 226816 7 145101 96927 59.95 242028 8 68039 109620 38.30 177659 9 60347 101472 37.29 161819 10 59963 97869 37.99 157832 11 62549 101078 38.23 163627 12 60470 103845 36.80 164315 13 59523 107027 35.74 166550 14 56959 107243 34.69 164202 15 56407 109473 34.00 165880 16 52048 107585 32.60 159633 17 49997 104592 32.34 154589 18 51061 106197 32.47 157258 19 49979 107496 31.74 157475 20 50863 108975 31.82 159838 21 50605 110004 31.51 160609 22 49694 107068 31.70 156762 23 49369 107385 31.49 156754 24 49247 107668 31.38 156915 25 48310 106812 31.14 155122 26 48649 105429 31.57 154078 27 48450 109048 30.76 157498 28 50135 107861 31.73 157996 29 48066 109546 30.50 157612 30 47939 108783 30.59 156722 31 48747 106150 31.47 154897 32 47815 103967 31.50 151782 33 48023 104938 31.40 152961 34 49246 104600 32.01 153846 35 47888 103474 31.64 151362 36 47491 105345 31.07 152836 37 46165 102893 30.97 149058 38 45592 102717 30.74 148309 39 47141 104874 31.01 152015 40 46560 102969 31.14 149529 41 46527 103001 31.12 149528 42 47367 104390 31.21 151757 43 46312 102935 31.03 149247 44 45904 102126 31.01 148030 45 46805 101975 31.46 148780 46 47260 103065 31.44 150325 47 46609 100785 31.62 147394 48 45858 100711 31.29 146569 49 47094 100518 31.90 147612 50 46068 102452 31.02 148520 51 45991 101943 31.09 147934 52 46786 105101 30.80 151887 53 44924 99354 31.14 144278 54 44374 98293 31.10 142667 55 43525 95387 31.33 138912 56 43396 95279 31.29 138675 57 43903 96265 31.32 140168 58 44090 96191 31.43 140281 59 43765 94601 31.63 138366 60 42659 94992 30.99 137651 61 43201 93392 31.63 136593 62 41930 94093 30.83 136023 63 41378 92787 30.84 134165 64 41241 92086 30.93 133327 65 41399 91958 31.04 133357 66 41985 91731 31.40 133716 67 41505 89835 31.60 131340 68 40220 89270 31.06 129490 69 40574 88661 31.40 129235 70 39949 88318 31.15 128267 71 38854 86916 30.89 125770 72 38660 86435 30.90 125095 73 38417 85105 31.10 123522 74 37797 83869 31.07 121666 75 36818 84076 30.45 120894 76 36953 82499 30.94 119452 77 37818 81864 31.60 119682 78 37767 82881 31.30 120648 79 36561 81279 31.03 117840 80 35686 80740 30.65 116426 81 35631 80200 30.76 115831 82 34996 78344 30.88 113340 83 35640 79726 30.89 115366 84 35541 79676 30.85 115217 85 34856 78079 30.86 112935 86 34059 76878 30.70 110937 87 32903 74985 30.50 107888 88 32933 74412 30.68 107345 89 32750 75286 30.31 108036 90 32881 74864 30.52 107745 91 32322 72854 30.73 105176 92 31446 72848 30.15 104294 93 31554 73299 30.09 104853 94 31779 71723 30.70 103502 95 31021 71076 30.38 102097 96 31179 72557 30.06 103736 97 30138 69938 30.12 100076 98 28148 65479 30.06 93627 99 21985 50923 30.15 72908 100 29074 64750 30.99 93824 101 26802 64188 29.46 90990 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 173316 227327 43.26 400643 2 98625 214431 31.50 313056 3 41619 210147 16.53 251766 4 22098 212653 9.41 234751 5 14597 193573 7.01 208170 6 13079 185674 6.58 198753 7 9844 231350 4.08 241194 8 4503 252818 1.75 257321 9 3627 240612 1.49 244239 10 3544 231557 1.51 235101 11 3627 236820 1.51 240447 12 3582 235943 1.50 239525 13 3197 228631 1.38 231828 14 2968 228213 1.28 231181 15 3009 234402 1.27 237411 16 2676 234241 1.13 236917 17 2488 232454 1.06 234942 18 2504 230922 1.07 233426 19 2451 231552 1.05 234003 20 2605 242366 1.06 244971 21 2470 244839 1.00 247309 22 2570 242378 1.05 244948 23 2639 245853 1.06 248492 24 2551 245902 1.03 248453 25 2777 239261 1.15 242038 26 2854 242087 1.17 244941 27 2537 244000 1.03 246537 28 2294 243363 0.93 245657 29 2606 245997 1.05 248603 30 2511 249250 1.00 251761 31 2519 241590 1.03 244109 32 2802 243923 1.14 246725 33 2529 245703 1.02 248232 34 2636 241570 1.08 244206 35 2894 242396 1.18 245290 36 2651 241793 1.08 244444 37 2635 235984 1.10 238619 38 2845 241282 1.17 244127 39 2710 238024 1.13 240734 40 2622 237456 1.09 240078 41 2782 237788 1.16 240570 42 2605 236676 1.09 239281 43 2668 234200 1.13 236868 44 2684 237997 1.12 240681 45 2664 235950 1.12 238614 46 2788 233831 1.18 236619 47 2852 232974 1.21 235826 48 2666 237329 1.11 239995 49 2727 231506 1.16 234233 50 2848 230808 1.22 233656 51 2890 233534 1.22 236424 52 2824 232047 1.20 234871 53 2848 228498 1.23 231346 54 2934 229539 1.26 232473 55 2879 226819 1.25 229698 56 2871 228544 1.24 231415 57 2763 225932 1.21 228695 58 2892 223974 1.27 226866 59 3004 225080 1.32 228084 60 2908 223230 1.29 226138 61 2868 223054 1.27 225922 62 2865 222307 1.27 225172 63 2803 219721 1.26 222524 64 2781 219871 1.25 222652 65 3115 217729 1.41 220844 66 2862 214346 1.32 217208 67 2811 208036 1.33 210847 68 3086 210312 1.45 213398 69 2922 208628 1.38 211550 70 2700 203924 1.31 206624 71 2762 204678 1.33 207440 72 2621 203614 1.27 206235 73 2731 201341 1.34 204072 74 2845 200272 1.40 203117 75 2603 199774 1.29 202377 76 2877 192566 1.47 195443 77 2874 195556 1.45 198430 78 2722 192482 1.39 195204 79 2740 186309 1.45 189049 80 2531 187342 1.33 189873 81 2568 184605 1.37 187173 82 2467 183291 1.33 185758 83 2616 186217 1.39 188833 84 2773 184630 1.48 187403 85 2484 181361 1.35 183845 86 2593 182106 1.40 184699 87 2863 181351 1.55 184214 88 3139 174554 1.77 177693 89 2582 177351 1.43 179933 90 2508 176110 1.40 178618 91 2566 173281 1.46 175847 92 2746 173908 1.55 176654 93 2775 171994 1.59 174769 94 2599 168090 1.52 170689 95 2634 166809 1.55 169443 96 2617 164959 1.56 167576 97 2472 151232 1.61 153704 98 2228 138161 1.59 140389 99 1426 89906 1.56 91332 100 1693 90312 1.84 92005 101 3408 150984 2.21 154392 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 184080 304589 37.67 488669 2 92793 330704 21.91 423497 3 49597 394208 11.18 443805 4 42805 414525 9.36 457330 5 40946 485130 7.78 526076 6 33164 522704 5.97 555868 7 29538 665205 4.25 694743 8 17934 720844 2.43 738778 9 13632 665850 2.01 679482 10 13169 651994 1.98 665163 11 15191 654211 2.27 669402 12 12712 660742 1.89 673454 13 13913 673753 2.02 687666 14 15266 690693 2.16 705959 15 13326 706886 1.85 720212 16 12778 715435 1.75 728213 17 14570 718753 1.99 733323 18 12660 743296 1.67 755956 19 12486 755849 1.63 768335 20 14550 780969 1.83 795519 21 12345 780025 1.56 792370 22 13484 782076 1.69 795560 23 14664 780219 1.84 794883 24 12718 781591 1.60 794309 25 14354 781495 1.80 795849 26 14984 788849 1.86 803833 27 12906 792325 1.60 805231 28 12596 795095 1.56 807691 29 14729 792153 1.83 806882 30 12684 783189 1.59 795873 31 13141 772152 1.67 785293 32 14931 773131 1.89 788062 33 12519 774297 1.59 786816 34 13944 778468 1.76 792412 35 14650 770384 1.87 785034 36 12850 777229 1.63 790079 37 12379 769399 1.58 781778 38 14400 772126 1.83 786526 39 12396 765281 1.59 777677 40 12629 764369 1.63 776998 41 14412 767140 1.84 781552 42 12948 772062 1.65 785010 43 13605 761405 1.76 775010 44 14196 764547 1.82 778743 45 12827 756323 1.67 769150 46 12914 755241 1.68 768155 47 14062 750946 1.84 765008 48 12259 748232 1.61 760491 49 12416 738846 1.65 751262 50 13566 734778 1.81 748344 51 11796 727701 1.60 739497 52 12832 721498 1.75 734330 53 13922 716010 1.91 729932 54 12171 715054 1.67 727225 55 12567 710990 1.74 723557 56 13826 707831 1.92 721657 57 11818 718316 1.62 730134 58 12277 711116 1.70 723393 59 13848 711935 1.91 725783 60 11679 701624 1.64 713303 61 12560 698506 1.77 711066 62 13279 689690 1.89 702969 63 11651 683117 1.68 694768 64 12518 677952 1.81 690470 65 13032 673699 1.90 686731 66 11305 669403 1.66 680708 67 11602 665345 1.71 676947 68 12947 661625 1.92 674572 69 11081 657349 1.66 668430 70 11244 651721 1.70 662965 71 12274 648097 1.86 660371 72 10689 644113 1.63 654802 73 12034 633166 1.87 645200 74 12362 634444 1.91 646806 75 10628 626538 1.67 637166 76 11507 622495 1.81 634002 77 12267 618569 1.94 630836 78 10317 611997 1.66 622314 79 11062 609012 1.78 620074 80 11613 605189 1.88 616802 81 10361 596726 1.71 607087 82 11256 590402 1.87 601658 83 11869 591432 1.97 603301 84 10856 582307 1.83 593163 85 10317 574458 1.76 584775 86 11395 569261 1.96 580656 87 11146 562647 1.94 573793 88 12322 548335 2.20 560657 89 11012 555222 1.94 566234 90 9679 552188 1.72 561867 91 10279 545212 1.85 555491 92 10619 544308 1.91 554927 93 9478 537858 1.73 547336 94 9641 529762 1.79 539403 95 10596 522871 1.99 533467 96 8825 513313 1.69 522138 97 8962 498432 1.77 507394 98 9485 464068 2.00 473553 99 5869 320736 1.80 326605 100 6521 284878 2.24 291399 101 9689 470215 2.02 479904 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 103372 95417 52.00 198789 2 87147 77606 52.90 164753 3 94510 88606 51.61 183116 4 85132 97946 46.50 183078 5 39098 126364 23.63 165462 6 24311 70095 25.75 94406 7 20939 73656 22.14 94595 8 21556 66596 24.45 88152 9 19267 58886 24.65 78153 10 20479 64543 24.09 85022 11 22303 62585 26.27 84888 12 21636 59966 26.51 81602 13 21893 58355 27.28 80248 14 23239 59766 28.00 83005 15 22435 55061 28.95 77496 16 21249 52604 28.77 73853 17 25056 57964 30.18 83020 18 24545 56528 30.28 81073 19 23192 54134 29.99 77326 20 21462 51977 29.22 73439 21 22468 50793 30.67 73261 22 22695 52279 30.27 74974 23 21620 50029 30.17 71649 24 20153 46771 30.11 66924 25 22095 50444 30.46 72539 26 20393 47866 29.88 68259 27 21223 48396 30.48 69619 28 20110 46218 30.32 66328 29 20733 47698 30.30 68431 30 19959 44985 30.73 64944 31 19233 45245 29.83 64478 32 18382 43277 29.81 61659 33 21645 44021 32.96 65666 34 19929 46312 30.09 66241 35 24174 49878 32.64 74052 36 20256 43854 31.60 64110 37 21074 45123 31.84 66197 38 18246 42292 30.14 60538 39 19219 42057 31.36 61276 40 20956 42286 33.14 63242 41 18184 41558 30.44 59742 42 18459 43022 30.02 61481 43 18275 41621 30.51 59896 44 17303 40645 29.86 57948 45 22130 45444 32.75 67574 46 16944 37737 30.99 54681 47 16980 37934 30.92 54914 48 17482 38155 31.42 55637 49 16611 38376 30.21 54987 50 16019 36925 30.26 52944 51 16175 35904 31.06 52079 52 16113 36449 30.66 52562 53 16397 35550 31.56 51947 54 15981 35826 30.85 51807 55 16473 35646 31.61 52119 56 15275 34262 30.84 49537 57 16111 35100 31.46 51211 58 15674 34614 31.17 50288 59 14940 32499 31.49 47439 60 15434 33406 31.60 48840 61 13592 32097 29.75 45689 62 14078 31600 30.82 45678 63 15219 31946 32.27 47165 64 14200 31135 31.32 45335 65 13642 29659 31.51 43301 66 14529 30656 32.15 45185 67 13737 31459 30.39 45196 68 15124 32458 31.79 47582 69 13484 29138 31.64 42622 70 12882 28894 30.84 41776 71 13340 27831 32.40 41171 72 12598 27691 31.27 40289 73 12637 28306 30.86 40943 74 11320 26993 29.55 38313 75 11405 26493 30.09 37898 76 11949 25989 31.50 37938 77 11472 26088 30.54 37560 78 11508 26428 30.34 37936 79 11311 25677 30.58 36988 80 11052 25366 30.35 36418 81 10824 25321 29.95 36145 82 10959 25096 30.40 36055 83 11039 24010 31.50 35049 84 12274 26326 31.80 38600 85 10508 24201 30.27 34709 86 10478 23945 30.44 34423 87 10398 23003 31.13 33401 88 10365 22999 31.07 33364 89 10903 23722 31.49 34625 90 10584 23353 31.19 33937 91 9931 22780 30.36 32711 92 9643 22081 30.40 31724 93 9530 21817 30.40 31347 94 10047 22015 31.34 32062 95 9793 21800 31.00 31593 96 9714 21672 30.95 31386 97 10605 23015 31.54 33620 98 9197 20125 31.37 29322 99 8375 0 100.00 8375 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25693 124223 17.14 149916 2 25239 123918 16.92 149157 3 22487 124307 15.32 146794 4 24539 135323 15.35 159862 5 2812 247109 1.13 249921 6 2139 307169 0.69 309308 7 1359 171248 0.79 172607 8 1456 181738 0.79 183194 9 1132 149508 0.75 150640 10 1235 144937 0.84 146172 11 1757 197432 0.88 199189 12 1320 155831 0.84 157151 13 1266 153024 0.82 154290 14 1230 144333 0.84 145563 15 1192 140391 0.84 141583 16 1127 130464 0.86 131591 17 1358 139506 0.96 140864 18 1459 124424 1.16 125883 19 1204 121315 0.98 122519 20 1142 120216 0.94 121358 21 1434 115574 1.23 117008 22 1167 125514 0.92 126681 23 1244 126011 0.98 127255 24 1003 112410 0.88 113413 25 1075 114007 0.93 115082 26 1170 119110 0.97 120280 27 1069 111885 0.95 112954 28 959 106687 0.89 107646 29 1082 115284 0.93 116366 30 988 110910 0.88 111898 31 974 104714 0.92 105688 32 953 106607 0.89 107560 33 1035 128957 0.80 129992 34 891 104394 0.85 105285 35 998 110300 0.90 111298 36 966 110654 0.87 111620 37 877 99998 0.87 100875 38 1005 106710 0.93 107715 39 947 97877 0.96 98824 40 898 98284 0.91 99182 41 877 95213 0.91 96090 42 911 90783 0.99 91694 43 844 93479 0.89 94323 44 869 91833 0.94 92702 45 821 87273 0.93 88094 46 794 87863 0.90 88657 47 872 90086 0.96 90958 48 931 85897 1.07 86828 49 842 90151 0.93 90993 50 820 85841 0.95 86661 51 816 81884 0.99 82700 52 814 80472 1.00 81286 53 867 90583 0.95 91450 54 769 82770 0.92 83539 55 833 80937 1.02 81770 56 809 81324 0.98 82133 57 877 77797 1.11 78674 58 719 76197 0.93 76916 59 748 78542 0.94 79290 60 884 77073 1.13 77957 61 741 76216 0.96 76957 62 741 78608 0.93 79349 63 809 76784 1.04 77593 64 662 72290 0.91 72952 65 758 74201 1.01 74959 66 665 69450 0.95 70115 67 742 75171 0.98 75913 68 658 71850 0.91 72508 69 693 71633 0.96 72326 70 715 71148 0.99 71863 71 676 72615 0.92 73291 72 603 67545 0.88 68148 73 613 66480 0.91 67093 74 644 68967 0.93 69611 75 596 66309 0.89 66905 76 566 63607 0.88 64173 77 646 67371 0.95 68017 78 600 62320 0.95 62920 79 579 62419 0.92 62998 80 588 61395 0.95 61983 81 574 59900 0.95 60474 82 559 58474 0.95 59033 83 543 58790 0.92 59333 84 511 57745 0.88 58256 85 565 63692 0.88 64257 86 567 57461 0.98 58028 87 524 57201 0.91 57725 88 518 54761 0.94 55279 89 522 56827 0.91 57349 90 581 56519 1.02 57100 91 537 59457 0.90 59994 92 456 55589 0.81 56045 93 497 53523 0.92 54020 94 462 52195 0.88 52657 95 559 54048 1.02 54607 96 555 50833 1.08 51388 97 478 50585 0.94 51063 98 433 50958 0.84 51391 99 332 0 100.00 332 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33971 158918 17.61 192889 2 27537 127554 17.76 155091 3 27425 132112 17.19 159537 4 26328 128970 16.95 155298 5 5738 267049 2.10 272787 6 5848 365327 1.58 371175 7 6350 504507 1.24 510857 8 6693 491121 1.34 497814 9 6790 464319 1.44 471109 10 6370 477015 1.32 483385 11 6602 469723 1.39 476325 12 6831 439956 1.53 446787 13 6401 456046 1.38 462447 14 6214 455178 1.35 461392 15 6275 470468 1.32 476743 16 6010 452680 1.31 458690 17 6240 449172 1.37 455412 18 6241 447522 1.38 453763 19 5481 412245 1.31 417726 20 5990 439873 1.34 445863 21 5855 416602 1.39 422457 22 5693 400817 1.40 406510 23 5601 396097 1.39 401698 24 5487 380802 1.42 386289 25 5571 378782 1.45 384353 26 5530 377228 1.44 382758 27 5928 406855 1.44 412783 28 5265 382146 1.36 387411 29 5503 372808 1.45 378311 30 5532 364072 1.50 369604 31 5060 359235 1.39 364295 32 4998 347194 1.42 352192 33 5165 344925 1.48 350090 34 5243 342161 1.51 347404 35 5642 355243 1.56 360885 36 5072 349345 1.43 354417 37 4822 346836 1.37 351658 38 5168 368406 1.38 373574 39 4985 332046 1.48 337031 40 4898 353702 1.37 358600 41 4849 329847 1.45 334696 42 4890 340960 1.41 345850 43 4708 320918 1.45 325626 44 4458 316047 1.39 320505 45 4873 318625 1.51 323498 46 4347 322502 1.33 326849 47 4477 314226 1.40 318703 48 4484 308155 1.43 312639 49 4344 317220 1.35 321564 50 4448 308696 1.42 313144 51 4520 302038 1.47 306558 52 4111 287416 1.41 291527 53 4008 287037 1.38 291045 54 3777 281415 1.32 285192 55 4105 292825 1.38 296930 56 3937 280206 1.39 284143 57 3981 292381 1.34 296362 58 3748 279811 1.32 283559 59 3878 267868 1.43 271746 60 4172 276820 1.48 280992 61 3699 264649 1.38 268348 62 3667 262675 1.38 266342 63 3796 264232 1.42 268028 64 3574 253279 1.39 256853 65 3477 259172 1.32 262649 66 3575 249310 1.41 252885 67 3316 250468 1.31 253784 68 3550 260860 1.34 264410 69 3609 251224 1.42 254833 70 3280 239665 1.35 242945 71 3305 238468 1.37 241773 72 3278 238246 1.36 241524 73 3199 234675 1.34 237874 74 3140 236730 1.31 239870 75 3211 234103 1.35 237314 76 2928 225030 1.28 227958 77 3166 223348 1.40 226514 78 3124 225537 1.37 228661 79 2960 230012 1.27 232972 80 2961 221081 1.32 224042 81 3149 222257 1.40 225406 82 2990 217458 1.36 220448 83 2946 215370 1.35 218316 84 3040 213011 1.41 216051 85 2896 211020 1.35 213916 86 2936 209644 1.38 212580 87 2931 208125 1.39 211056 88 2606 200704 1.28 203310 89 2743 199986 1.35 202729 90 2817 198742 1.40 201559 91 2803 197567 1.40 200370 92 2592 195664 1.31 198256 93 2585 193168 1.32 195753 94 2586 191469 1.33 194055 95 2508 188200 1.32 190708 96 2437 185180 1.30 187617 97 2323 184966 1.24 187289 98 2052 177422 1.14 179474 99 1496 0 100.00 1496