/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R2_001_val_2.fq.gz
Data processed at 05:18 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
22734395
Paired-end alignments with a unique best hit
9655534
Pairs without alignments under any condition
10981695
Pairs that did not map uniquely
2097166
Genomic sequence context not extractable (edges of chromosomes)
4
Cytosine Methylation
Total C's analysed
292287685
Methylated C's in CpG context
12549941
Methylated C's in CHG context
1572027
Methylated C's in CHH context
3841851
Methylated C's in Unknown context
60882
Unmethylated C's in CpG context
29075423
Unmethylated C's in CHG context
62324170
Unmethylated C's in CHH context
182924273
Unmethylated C's in Unknown context
633983
Percentage methylation (CpG context)
30.1%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4757885
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4897645
original bottom strand
Deduplication
Alignments analysed
9655530
Unique alignments
7098905
Duplicates removed
2556625
Duplicated alignments were found at 1509525 different positions
