EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6296462 lines in total Total number of methylation call strings processed: 12592924 Final Cytosine Methylation Report ================================= Total number of C's analysed: 128398540 Total methylated C's in CpG context: 5213255 Total methylated C's in CHG context: 627120 Total methylated C's in CHH context: 2204316 Total C to T conversions in CpG context: 12567730 Total C to T conversions in CHG context: 26364706 Total C to T conversions in CHH context: 81421413 C methylated in CpG context: 29.3% C methylated in CHG context: 2.3% C methylated in CHH context: 2.6%