CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 97260 138280 41.29 235540 2 92397 153309 37.60 245706 3 91349 143893 38.83 235242 4 96091 128694 42.75 224785 5 93791 112948 45.37 206739 6 95221 94299 50.24 189520 7 106192 91543 53.70 197735 8 52389 106630 32.95 159019 9 47149 99073 32.24 146222 10 47337 96733 32.86 144070 11 49378 98901 33.30 148279 12 47923 98362 32.76 146285 13 47606 100279 32.19 147885 14 44992 100930 30.83 145922 15 44607 102294 30.37 146901 16 41462 102311 28.84 143773 17 39778 99287 28.60 139065 18 40529 101576 28.52 142105 19 40191 101340 28.40 141531 20 40355 103291 28.09 143646 21 40943 102740 28.50 143683 22 39681 101621 28.08 141302 23 39502 101233 28.07 140735 24 39434 102070 27.87 141504 25 39018 100490 27.97 139508 26 38909 100375 27.94 139284 27 38487 102442 27.31 140929 28 39778 102361 27.99 142139 29 38482 101167 27.56 139649 30 38220 101749 27.31 139969 31 38823 100695 27.83 139518 32 37932 98978 27.71 136910 33 38180 99510 27.73 137690 34 39225 99137 28.35 138362 35 38456 99512 27.87 137968 36 37665 100372 27.29 138037 37 37067 97424 27.56 134491 38 36516 96895 27.37 133411 39 37734 98729 27.65 136463 40 37204 97330 27.65 134534 41 36948 97089 27.57 134037 42 38165 98445 27.94 136610 43 37275 97363 27.69 134638 44 36723 96293 27.61 133016 45 37064 95963 27.86 133027 46 37507 96589 27.97 134096 47 36424 94608 27.80 131032 48 36153 94746 27.62 130899 49 36927 95254 27.94 132181 50 36454 95262 27.68 131716 51 36120 94104 27.74 130224 52 36774 96012 27.69 132786 53 35464 92831 27.64 128295 54 34685 91405 27.51 126090 55 34808 89901 27.91 124709 56 34149 89382 27.64 123531 57 34607 90372 27.69 124979 58 34795 89891 27.91 124686 59 34511 88498 28.06 123009 60 33375 89062 27.26 122437 61 33761 86744 28.02 120505 62 32985 86673 27.57 119658 63 32333 86231 27.27 118564 64 31973 85715 27.17 117688 65 32174 84740 27.52 116914 66 32867 85192 27.84 118059 67 31905 83006 27.76 114911 68 31314 83316 27.32 114630 69 31353 82561 27.52 113914 70 30727 81459 27.39 112186 71 30083 79613 27.42 109696 72 29752 79506 27.23 109258 73 29591 78490 27.38 108081 74 29482 78067 27.41 107549 75 28711 77145 27.12 105856 76 28409 77133 26.92 105542 77 28961 75320 27.77 104281 78 28488 75948 27.28 104436 79 27956 74622 27.25 102578 80 27389 74509 26.88 101898 81 26893 74023 26.65 100916 82 26587 72031 26.96 98618 83 26929 72108 27.19 99037 84 26516 71554 27.04 98070 85 26052 70989 26.85 97041 86 25378 68924 26.91 94302 87 24953 68623 26.67 93576 88 24448 67633 26.55 92081 89 24634 67798 26.65 92432 90 24245 67818 26.34 92063 91 23677 66203 26.34 89880 92 23521 65623 26.39 89144 93 23589 65591 26.45 89180 94 23262 64940 26.37 88202 95 22739 64047 26.20 86786 96 22596 64055 26.08 86651 97 22398 61900 26.57 84298 98 20775 58232 26.30 79007 99 16455 45648 26.50 62103 100 21279 57812 26.90 79091 101 19745 57770 25.47 77515 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 113242 218757 34.11 331999 2 63329 209555 23.21 272884 3 28118 203380 12.15 231498 4 16538 200264 7.63 216802 5 10959 179901 5.74 190860 6 9214 169110 5.17 178324 7 6827 211894 3.12 218721 8 3418 228353 1.47 231771 9 2877 218098 1.30 220975 10 2922 211047 1.37 213969 11 3088 211111 1.44 214199 12 2937 206984 1.40 209921 13 2626 203588 1.27 206214 14 2441 203332 1.19 205773 15 2575 207984 1.22 210559 16 2165 207968 1.03 210133 17 2239 205684 1.08 207923 18 2117 203967 1.03 206084 19 2054 204611 0.99 206665 20 2189 214151 1.01 216340 21 2112 215155 0.97 217267 22 2239 213401 1.04 215640 23 2360 216145 1.08 218505 24 2306 217084 1.05 219390 25 2453 211551 1.15 214004 26 2614 213635 1.21 216249 27 2133 215599 0.98 217732 28 2101 213569 0.97 215670 29 2422 217770 1.10 220192 30 2215 217877 1.01 220092 31 2257 213282 1.05 215539 32 2399 216123 1.10 218522 33 2236 217466 1.02 219702 34 2332 213071 1.08 215403 35 2710 212573 1.26 215283 36 2322 213558 1.08 215880 37 2210 209029 1.05 211239 38 2617 212547 1.22 215164 39 2333 210876 1.09 213209 40 2349 210489 1.10 212838 41 2317 209740 1.09 212057 42 2399 209217 1.13 211616 43 2432 206055 1.17 208487 44 2400 208609 1.14 211009 45 2484 207207 1.18 209691 46 2627 205305 1.26 207932 47 2585 205133 1.24 207718 48 2429 208676 1.15 211105 49 2428 203661 1.18 206089 50 2728 202814 1.33 205542 51 2536 204467 1.23 207003 52 2552 203427 1.24 205979 53 2545 199982 1.26 202527 54 2625 199881 1.30 202506 55 2601 198318 1.29 200919 56 2654 198994 1.32 201648 57 2686 197946 1.34 200632 58 2597 195581 1.31 198178 59 2769 195672 1.40 198441 60 2555 194083 1.30 196638 61 2624 190557 1.36 193181 62 2794 191878 1.44 194672 63 2628 190262 1.36 192890 64 2653 187495 1.40 190148 65 3036 187866 1.59 190902 66 2659 183082 1.43 185741 67 2598 180224 1.42 182822 68 2883 180446 1.57 183329 69 2532 179641 1.39 182173 70 2449 174800 1.38 177249 71 2579 175052 1.45 177631 72 2498 173639 1.42 176137 73 2454 171888 1.41 174342 74 2695 170805 1.55 173500 75 2311 170902 1.33 173213 76 2656 163315 1.60 165971 77 2634 164409 1.58 167043 78 2369 162199 1.44 164568 79 2506 158862 1.55 161368 80 2327 158748 1.44 161075 81 2266 156430 1.43 158696 82 2327 153698 1.49 156025 83 2446 156194 1.54 158640 84 2380 155181 1.51 157561 85 2416 152118 1.56 154534 86 2406 151184 1.57 153590 87 2558 151496 1.66 154054 88 2840 144768 1.92 147608 89 2213 146945 1.48 149158 90 2185 146047 1.47 148232 91 2221 144048 1.52 146269 92 2203 144790 1.50 146993 93 2332 142945 1.61 145277 94 2262 139811 1.59 142073 95 2243 137705 1.60 139948 96 2254 137035 1.62 139289 97 2245 125898 1.75 128143 98 2020 114594 1.73 116614 99 1255 75312 1.64 76567 100 1484 75805 1.92 77289 101 3136 124200 2.46 127336 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 157805 302129 34.31 459934 2 82383 322667 20.34 405050 3 44458 353476 11.17 397934 4 38570 380328 9.21 418898 5 37511 441110 7.84 478621 6 30353 482230 5.92 512583 7 24309 601254 3.89 625563 8 18009 648188 2.70 666197 9 13501 597030 2.21 610531 10 13241 578308 2.24 591549 11 16425 579375 2.76 595800 12 13475 584250 2.25 597725 13 14861 593914 2.44 608775 14 16629 609381 2.66 626010 15 14185 622327 2.23 636512 16 13903 629510 2.16 643413 17 16846 634826 2.59 651672 18 13754 656974 2.05 670728 19 14039 667917 2.06 681956 20 16378 687551 2.33 703929 21 13771 692011 1.95 705782 22 14885 691208 2.11 706093 23 16998 692776 2.39 709774 24 14194 690803 2.01 704997 25 15880 691803 2.24 707683 26 17390 700419 2.42 717809 27 14406 702676 2.01 717082 28 13916 707437 1.93 721353 29 16865 704838 2.34 721703 30 14153 699602 1.98 713755 31 14821 690268 2.10 705089 32 16799 685896 2.39 702695 33 13917 688606 1.98 702523 34 15648 691286 2.21 706934 35 16789 683189 2.40 699978 36 14361 691105 2.04 705466 37 13706 683968 1.96 697674 38 16535 684853 2.36 701388 39 13704 678201 1.98 691905 40 13983 673537 2.03 687520 41 16460 675963 2.38 692423 42 14299 675875 2.07 690174 43 15301 670729 2.23 686030 44 16237 673166 2.36 689403 45 14348 665679 2.11 680027 46 14112 664117 2.08 678229 47 15980 660961 2.36 676941 48 13420 657454 2.00 670874 49 13875 651267 2.09 665142 50 15455 647007 2.33 662462 51 12989 640735 1.99 653724 52 14314 634903 2.20 649217 53 15879 627784 2.47 643663 54 13672 625351 2.14 639023 55 13911 619055 2.20 632966 56 15689 617592 2.48 633281 57 13039 621649 2.05 634688 58 13778 617926 2.18 631704 59 15671 616993 2.48 632664 60 12624 609315 2.03 621939 61 13732 603329 2.23 617061 62 15019 593749 2.47 608768 63 12909 590372 2.14 603281 64 14000 585303 2.34 599303 65 14679 579505 2.47 594184 66 12392 576269 2.11 588661 67 12743 571879 2.18 584622 68 14560 567388 2.50 581948 69 11938 564007 2.07 575945 70 12378 556667 2.18 569045 71 13904 553467 2.45 567371 72 11881 551132 2.11 563013 73 13364 540088 2.41 553452 74 13815 539326 2.50 553141 75 11846 533708 2.17 545554 76 12600 529038 2.33 541638 77 13694 525589 2.54 539283 78 11068 521997 2.08 533065 79 11870 515920 2.25 527790 80 13243 513014 2.52 526257 81 11551 504594 2.24 516145 82 12394 498570 2.43 510964 83 13328 499123 2.60 512451 84 11746 491579 2.33 503325 85 11211 484876 2.26 496087 86 12435 478411 2.53 490846 87 11638 472540 2.40 484178 88 12596 459088 2.67 471684 89 12590 464446 2.64 477036 90 10378 460982 2.20 471360 91 10703 454911 2.30 465614 92 11656 451129 2.52 462785 93 10002 448058 2.18 458060 94 10240 440802 2.27 451042 95 11501 435396 2.57 446897 96 9457 425583 2.17 435040 97 9445 413161 2.23 422606 98 10224 385635 2.58 395859 99 6038 266485 2.22 272523 100 6793 238339 2.77 245132 101 10325 389088 2.59 399413 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 72049 80556 47.21 152605 2 61841 68492 47.45 130333 3 68786 78341 46.75 147127 4 62719 88676 41.43 151395 5 27999 115572 19.50 143571 6 16698 63085 20.93 79783 7 14640 64437 18.51 79077 8 15283 59366 20.47 74649 9 13630 52567 20.59 66197 10 14832 57649 20.46 72481 11 15715 56214 21.85 71929 12 15260 53101 22.32 68361 13 15846 52176 23.30 68022 14 16693 53000 23.95 69693 15 16062 49472 24.51 65534 16 15186 46546 24.60 61732 17 17773 50730 25.94 68503 18 17603 50325 25.91 67928 19 16670 48572 25.55 65242 20 15425 46713 24.82 62138 21 16137 45161 26.33 61298 22 15977 45818 25.85 61795 23 15128 44217 25.49 59345 24 14386 41983 25.52 56369 25 15733 44235 26.24 59968 26 14415 42303 25.42 56718 27 15400 42743 26.49 58143 28 14381 40819 26.05 55200 29 14529 41797 25.79 56326 30 14221 39747 26.35 53968 31 13594 39536 25.59 53130 32 13144 37387 26.01 50531 33 15026 38282 28.19 53308 34 14056 40134 25.94 54190 35 16564 43051 27.78 59615 36 14381 38030 27.44 52411 37 14421 38335 27.34 52756 38 13073 37165 26.02 50238 39 13228 36826 26.43 50054 40 14630 36834 28.43 51464 41 12762 36350 25.99 49112 42 12938 37026 25.89 49964 43 12953 35816 26.56 48769 44 12260 34577 26.18 46837 45 14653 38151 27.75 52804 46 11916 32282 26.96 44198 47 12031 32961 26.74 44992 48 12148 33457 26.64 45605 49 11828 33399 26.15 45227 50 11139 31429 26.17 42568 51 11165 31111 26.41 42276 52 11246 31255 26.46 42501 53 11247 30928 26.67 42175 54 11071 30913 26.37 41984 55 11385 30857 26.95 42242 56 10617 29829 26.25 40446 57 10754 30069 26.34 40823 58 10604 29597 26.38 40201 59 10155 27894 26.69 38049 60 10574 28363 27.16 38937 61 9580 27295 25.98 36875 62 9275 26947 25.61 36222 63 10082 26934 27.24 37016 64 9503 26246 26.58 35749 65 9419 25443 27.02 34862 66 9633 25883 27.12 35516 67 8858 26750 24.88 35608 68 9805 27208 26.49 37013 69 8937 24331 26.86 33268 70 8590 24269 26.14 32859 71 8944 23643 27.45 32587 72 8344 22998 26.62 31342 73 8420 23747 26.18 32167 74 7650 22280 25.56 29930 75 7763 22323 25.80 30086 76 8009 21803 26.87 29812 77 7824 21812 26.40 29636 78 7907 21769 26.64 29676 79 7464 21181 26.06 28645 80 7331 21050 25.83 28381 81 7343 20758 26.13 28101 82 7322 21123 25.74 28445 83 7397 20264 26.74 27661 84 8015 21681 26.99 29696 85 7026 19978 26.02 27004 86 6985 19855 26.02 26840 87 6847 19274 26.21 26121 88 6993 19003 26.90 25996 89 7275 19741 26.93 27016 90 7046 19336 26.71 26382 91 6679 18736 26.28 25415 92 6600 18417 26.38 25017 93 6688 17997 27.09 24685 94 6692 18528 26.53 25220 95 6437 18287 26.04 24724 96 6470 17825 26.63 24295 97 6811 18961 26.43 25772 98 6176 16612 27.10 22788 99 5469 0 100.00 5469 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20709 102808 16.77 123517 2 21487 104867 17.01 126354 3 19755 106287 15.67 126042 4 21418 112639 15.98 134057 5 2210 207675 1.05 209885 6 1729 256241 0.67 257970 7 1077 140782 0.76 141859 8 1040 147385 0.70 148425 9 891 123615 0.72 124506 10 898 117759 0.76 118657 11 1346 155766 0.86 157112 12 1100 125838 0.87 126938 13 975 124015 0.78 124990 14 1000 118223 0.84 119223 15 1003 114178 0.87 115181 16 977 106092 0.91 107069 17 992 111853 0.88 112845 18 1176 101060 1.15 102236 19 909 97951 0.92 98860 20 886 97220 0.90 98106 21 1219 93766 1.28 94985 22 987 100571 0.97 101558 23 909 99923 0.90 100832 24 763 90967 0.83 91730 25 823 91919 0.89 92742 26 920 95801 0.95 96721 27 846 90185 0.93 91031 28 796 85853 0.92 86649 29 834 90571 0.91 91405 30 862 88511 0.96 89373 31 764 84014 0.90 84778 32 776 85246 0.90 86022 33 831 99887 0.83 100718 34 710 83616 0.84 84326 35 737 86499 0.84 87236 36 732 86587 0.84 87319 37 661 79414 0.83 80075 38 772 83561 0.92 84333 39 717 78517 0.90 79234 40 693 77473 0.89 78166 41 674 74434 0.90 75108 42 731 70876 1.02 71607 43 702 74165 0.94 74867 44 617 73169 0.84 73786 45 665 68763 0.96 69428 46 625 68947 0.90 69572 47 665 70274 0.94 70939 48 640 67827 0.93 68467 49 638 70488 0.90 71126 50 648 67940 0.94 68588 51 619 63835 0.96 64454 52 657 63093 1.03 63750 53 638 69829 0.91 70467 54 625 64141 0.97 64766 55 605 62879 0.95 63484 56 568 63475 0.89 64043 57 709 60868 1.15 61577 58 616 59640 1.02 60256 59 618 60915 1.00 61533 60 719 59851 1.19 60570 61 528 59039 0.89 59567 62 634 60665 1.03 61299 63 579 59446 0.96 60025 64 510 56111 0.90 56621 65 535 56985 0.93 57520 66 489 53881 0.90 54370 67 516 57737 0.89 58253 68 473 55314 0.85 55787 69 524 55202 0.94 55726 70 481 54786 0.87 55267 71 488 55815 0.87 56303 72 475 51852 0.91 52327 73 457 50963 0.89 51420 74 468 52525 0.88 52993 75 477 50329 0.94 50806 76 455 48929 0.92 49384 77 437 51213 0.85 51650 78 449 47774 0.93 48223 79 452 47965 0.93 48417 80 397 46356 0.85 46753 81 434 45563 0.94 45997 82 354 44140 0.80 44494 83 397 45644 0.86 46041 84 402 44033 0.90 44435 85 389 48007 0.80 48396 86 374 43834 0.85 44208 87 415 43472 0.95 43887 88 371 41889 0.88 42260 89 439 43399 1.00 43838 90 420 42591 0.98 43011 91 378 44322 0.85 44700 92 386 41755 0.92 42141 93 361 40186 0.89 40547 94 384 39235 0.97 39619 95 383 40822 0.93 41205 96 404 38975 1.03 39379 97 344 38310 0.89 38654 98 343 37517 0.91 37860 99 288 0 100.00 288 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 31619 140093 18.41 171712 2 26213 114225 18.67 140438 3 26520 115251 18.71 141771 4 25697 110822 18.82 136519 5 6282 222022 2.75 228304 6 6228 304225 2.01 310453 7 6385 417774 1.51 424159 8 6978 410377 1.67 417355 9 7535 386488 1.91 394023 10 6496 394411 1.62 400907 11 6811 387982 1.73 394793 12 6947 362133 1.88 369080 13 6477 374133 1.70 380610 14 6320 373782 1.66 380102 15 6515 382211 1.68 388726 16 6012 364683 1.62 370695 17 6385 363154 1.73 369539 18 6239 362087 1.69 368326 19 5623 338429 1.63 344052 20 6066 354669 1.68 360735 21 6022 335938 1.76 341960 22 5796 324122 1.76 329918 23 5624 318402 1.74 324026 24 5554 306559 1.78 312113 25 5610 305763 1.80 311373 26 5461 303422 1.77 308883 27 5881 324354 1.78 330235 28 5177 308952 1.65 314129 29 5427 300243 1.78 305670 30 5506 293474 1.84 298980 31 5065 288358 1.73 293423 32 5011 279981 1.76 284992 33 5191 276644 1.84 281835 34 4923 275177 1.76 280100 35 5420 282988 1.88 288408 36 4858 277896 1.72 282754 37 4620 275522 1.65 280142 38 5056 288831 1.72 293887 39 5045 265870 1.86 270915 40 4675 279092 1.65 283767 41 4746 261952 1.78 266698 42 4887 267201 1.80 272088 43 4518 253957 1.75 258475 44 4496 251828 1.75 256324 45 4638 252888 1.80 257526 46 4191 255059 1.62 259250 47 4309 248969 1.70 253278 48 4379 243704 1.77 248083 49 4108 247088 1.64 251196 50 4288 242044 1.74 246332 51 4292 238299 1.77 242591 52 3990 227201 1.73 231191 53 3832 225387 1.67 229219 54 3671 219979 1.64 223650 55 3839 226008 1.67 229847 56 3659 219273 1.64 222932 57 3760 226363 1.63 230123 58 3437 219285 1.54 222722 59 3683 210126 1.72 213809 60 3759 215916 1.71 219675 61 3584 207502 1.70 211086 62 3515 204901 1.69 208416 63 3498 205329 1.68 208827 64 3441 198855 1.70 202296 65 3332 200881 1.63 204213 66 3447 193800 1.75 197247 67 3284 195408 1.65 198692 68 3331 200098 1.64 203429 69 3428 194612 1.73 198040 70 3035 187672 1.59 190707 71 3109 185452 1.65 188561 72 3182 183903 1.70 187085 73 3040 181568 1.65 184608 74 3087 182646 1.66 185733 75 3043 181164 1.65 184207 76 2798 174464 1.58 177262 77 2956 171564 1.69 174520 78 2992 174318 1.69 177310 79 2757 175824 1.54 178581 80 2923 170415 1.69 173338 81 3006 169871 1.74 172877 82 2828 166843 1.67 169671 83 2873 165542 1.71 168415 84 2845 164265 1.70 167110 85 2598 162996 1.57 165594 86 2731 160801 1.67 163532 87 2809 159326 1.73 162135 88 2395 154198 1.53 156593 89 2577 152852 1.66 155429 90 2695 152739 1.73 155434 91 2412 150440 1.58 152852 92 2326 149135 1.54 151461 93 2413 147952 1.60 150365 94 2235 146485 1.50 148720 95 2268 142522 1.57 144790 96 2325 141184 1.62 143509 97 1955 140727 1.37 142682 98 1879 134802 1.37 136681 99 1317 0 100.00 1317