CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 172023 299338 36.49 471361 2 161613 325253 33.19 486866 3 152262 280825 35.16 433087 4 158534 219616 41.92 378150 5 154398 186966 45.23 341364 6 156040 158188 49.66 314228 7 175149 154872 53.07 330021 8 85662 173609 33.04 259271 9 76787 158953 32.57 235740 10 77409 153619 33.51 231028 11 80561 157598 33.83 238159 12 78013 161319 32.60 239332 13 76293 166767 31.39 243060 14 73198 165069 30.72 238267 15 71742 167039 30.05 238781 16 66481 165277 28.69 231758 17 63191 160295 28.28 223486 18 64429 162177 28.43 226606 19 63647 164444 27.90 228091 20 64449 166484 27.91 230933 21 64012 167985 27.59 231997 22 62760 165275 27.52 228035 23 63029 165093 27.63 228122 24 61486 164411 27.22 225897 25 60619 162343 27.19 222962 26 60617 161168 27.33 221785 27 60949 166037 26.85 226986 28 62169 163231 27.58 225400 29 60183 168351 26.33 228534 30 59911 164813 26.66 224724 31 60672 162035 27.24 222707 32 59677 158233 27.39 217910 33 60110 159558 27.36 219668 34 61416 159352 27.82 220768 35 60001 158225 27.49 218226 36 59312 159912 27.06 219224 37 58055 156606 27.04 214661 38 56874 156863 26.61 213737 39 58795 159482 26.94 218277 40 58920 156879 27.30 215799 41 58742 157135 27.21 215877 42 59669 159206 27.26 218875 43 58339 157462 27.03 215801 44 58378 155655 27.28 214033 45 58920 155347 27.50 214267 46 59240 157372 27.35 216612 47 58627 153599 27.62 212226 48 57981 154085 27.34 212066 49 59428 154522 27.78 213950 50 57280 156498 26.79 213778 51 58445 154865 27.40 213310 52 58377 161626 26.53 220003 53 57217 153450 27.16 210667 54 56413 151810 27.09 208223 55 55833 147362 27.48 203195 56 54964 145554 27.41 200518 57 55939 147832 27.45 203771 58 55606 147603 27.36 203209 59 55935 146787 27.59 202722 60 54174 147103 26.92 201277 61 55038 144458 27.59 199496 62 53497 145781 26.85 199278 63 53139 144332 26.91 197471 64 52475 143598 26.76 196073 65 52990 142003 27.18 194993 66 54078 142629 27.49 196707 67 53115 140486 27.44 193601 68 52206 139399 27.25 191605 69 51781 138424 27.22 190205 70 51318 138156 27.08 189474 71 49852 136369 26.77 186221 72 49845 135463 26.90 185308 73 49558 133396 27.09 182954 74 49427 131874 27.26 181301 75 48095 131464 26.79 179559 76 47851 129842 26.93 177693 77 48773 128647 27.49 177420 78 48923 130287 27.30 179210 79 47347 127137 27.14 174484 80 46766 127654 26.81 174420 81 46065 126187 26.74 172252 82 45230 124734 26.61 169964 83 46131 125328 26.90 171459 84 46124 124696 27.00 170820 85 45125 123752 26.72 168877 86 44225 120823 26.80 165048 87 43004 119502 26.46 162506 88 43251 117652 26.88 160903 89 42305 118963 26.23 161268 90 42840 117287 26.75 160127 91 42168 115650 26.72 157818 92 41561 115212 26.51 156773 93 41517 114896 26.54 156413 94 41140 113967 26.52 155107 95 39985 112269 26.26 152254 96 40691 114750 26.18 155441 97 39204 109906 26.29 149110 98 36999 103005 26.43 140004 99 28659 81616 25.99 110275 100 37124 103044 26.49 140168 101 34095 102127 25.03 136222 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 235463 353094 40.01 588557 2 137494 330365 29.39 467859 3 59008 317365 15.68 376373 4 29510 316424 8.53 345934 5 18427 290097 5.97 308524 6 16825 284479 5.58 301304 7 11841 345557 3.31 357398 8 5462 371440 1.45 376902 9 4657 350213 1.31 354870 10 4591 338336 1.34 342927 11 4593 339857 1.33 344450 12 4462 339871 1.30 344333 13 4104 329042 1.23 333146 14 3796 326644 1.15 330440 15 3835 334391 1.13 338226 16 3437 334405 1.02 337842 17 3281 331303 0.98 334584 18 3240 328854 0.98 332094 19 3094 328946 0.93 332040 20 3128 340385 0.91 343513 21 3196 345984 0.92 349180 22 3238 343828 0.93 347066 23 3310 345911 0.95 349221 24 3203 347559 0.91 350762 25 3634 338502 1.06 342136 26 3314 342454 0.96 345768 27 3193 345231 0.92 348424 28 3068 343674 0.88 346742 29 3251 347854 0.93 351105 30 3254 350592 0.92 353846 31 3157 344555 0.91 347712 32 3543 346320 1.01 349863 33 3197 347888 0.91 351085 34 3177 343184 0.92 346361 35 3483 343364 1.00 346847 36 3268 342429 0.95 345697 37 3154 335694 0.93 338848 38 3386 341190 0.98 344576 39 3270 339002 0.96 342272 40 3135 336700 0.92 339835 41 3283 337940 0.96 341223 42 3329 336536 0.98 339865 43 3381 333569 1.00 336950 44 3353 337595 0.98 340948 45 3380 337485 0.99 340865 46 3394 332152 1.01 335546 47 3544 332861 1.05 336405 48 3480 338539 1.02 342019 49 3433 332005 1.02 335438 50 3601 331828 1.07 335429 51 3462 333870 1.03 337332 52 3597 330774 1.08 334371 53 3583 327087 1.08 330670 54 3673 330326 1.10 333999 55 3572 325846 1.08 329418 56 3593 328671 1.08 332264 57 3662 325616 1.11 329278 58 3544 323823 1.08 327367 59 3770 324988 1.15 328758 60 3666 324829 1.12 328495 61 3590 321926 1.10 325516 62 3777 322202 1.16 325979 63 3655 319476 1.13 323131 64 3732 319853 1.15 323585 65 3932 317243 1.22 321175 66 3879 311612 1.23 315491 67 3719 305445 1.20 309164 68 3925 307623 1.26 311548 69 3803 306121 1.23 309924 70 3701 301178 1.21 304879 71 3562 300534 1.17 304096 72 3675 298792 1.22 302467 73 3449 295276 1.15 298725 74 3702 293318 1.25 297020 75 3594 293402 1.21 296996 76 3843 284325 1.33 288168 77 3674 287158 1.26 290832 78 3487 281815 1.22 285302 79 3762 277424 1.34 281186 80 3399 276872 1.21 280271 81 3430 273872 1.24 277302 82 3460 270280 1.26 273740 83 3572 274189 1.29 277761 84 3820 272682 1.38 276502 85 3606 269113 1.32 272719 86 3670 270500 1.34 274170 87 4113 267892 1.51 272005 88 4654 258773 1.77 263427 89 3499 262911 1.31 266410 90 3542 261116 1.34 264658 91 3536 257156 1.36 260692 92 3739 256508 1.44 260247 93 3789 255362 1.46 259151 94 3543 249587 1.40 253130 95 3704 246937 1.48 250641 96 3687 245974 1.48 249661 97 3544 225019 1.55 228563 98 3128 206001 1.50 209129 99 2032 133703 1.50 135735 100 2224 135977 1.61 138201 101 4810 223544 2.11 228354 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 249943 466179 34.90 716122 2 120354 492984 19.62 613338 3 60887 577395 9.54 638282 4 50611 620598 7.54 671209 5 46896 727368 6.06 774264 6 37891 794122 4.55 832013 7 33749 980816 3.33 1014565 8 20419 1054291 1.90 1074710 9 15851 971691 1.61 987542 10 15573 948364 1.62 963937 11 17439 946645 1.81 964084 12 15262 956159 1.57 971421 13 16372 972837 1.66 989209 14 17390 994628 1.72 1012018 15 15250 1019696 1.47 1034946 16 14988 1034201 1.43 1049189 17 16831 1042026 1.59 1058857 18 14813 1076863 1.36 1091676 19 14786 1097584 1.33 1112370 20 16678 1131510 1.45 1148188 21 14706 1134158 1.28 1148864 22 15668 1138663 1.36 1154331 23 17092 1142232 1.47 1159324 24 15124 1145782 1.30 1160906 25 17046 1147258 1.46 1164304 26 17258 1158807 1.47 1176065 27 15385 1162545 1.31 1177930 28 14898 1166344 1.26 1181242 29 16958 1163003 1.44 1179961 30 15022 1152733 1.29 1167755 31 15368 1138110 1.33 1153478 32 17780 1139394 1.54 1157174 33 14599 1141225 1.26 1155824 34 16011 1149462 1.37 1165473 35 17272 1134592 1.50 1151864 36 15220 1146352 1.31 1161572 37 14707 1134588 1.28 1149295 38 16687 1139852 1.44 1156539 39 14976 1132812 1.30 1147788 40 15029 1133452 1.31 1148481 41 17047 1135446 1.48 1152493 42 15357 1144096 1.32 1159453 43 15832 1126882 1.39 1142714 44 16456 1133636 1.43 1150092 45 15197 1121176 1.34 1136373 46 15373 1124154 1.35 1139527 47 16719 1116130 1.48 1132849 48 14783 1117730 1.31 1132513 49 14878 1104746 1.33 1119624 50 16287 1098365 1.46 1114652 51 14361 1087288 1.30 1101649 52 15225 1080875 1.39 1096100 53 16404 1072854 1.51 1089258 54 14669 1073786 1.35 1088455 55 15238 1071363 1.40 1086601 56 16320 1067850 1.51 1084170 57 14540 1082342 1.33 1096882 58 14912 1072499 1.37 1087411 59 16381 1077708 1.50 1094089 60 14206 1058987 1.32 1073193 61 14807 1055291 1.38 1070098 62 15925 1043990 1.50 1059915 63 14455 1035915 1.38 1050370 64 15344 1028030 1.47 1043374 65 16000 1023301 1.54 1039301 66 14079 1017546 1.36 1031625 67 14405 1012543 1.40 1026948 68 15710 1008445 1.53 1024155 69 13656 1000491 1.35 1014147 70 14380 995031 1.42 1009411 71 15272 988637 1.52 1003909 72 13813 983504 1.39 997317 73 14591 971475 1.48 986066 74 14905 968675 1.52 983580 75 13532 962109 1.39 975641 76 15156 954959 1.56 970115 77 15229 948567 1.58 963796 78 13098 942215 1.37 955313 79 14094 933757 1.49 947851 80 14850 929441 1.57 944291 81 13277 915842 1.43 929119 82 13734 908217 1.49 921951 83 14907 908737 1.61 923644 84 13648 894984 1.50 908632 85 12941 885962 1.44 898903 86 14235 876462 1.60 890697 87 14481 867494 1.64 881975 88 16395 847695 1.90 864090 89 13988 857416 1.61 871404 90 12444 853007 1.44 865451 91 12856 841991 1.50 854847 92 13558 838755 1.59 852313 93 12138 828905 1.44 841043 94 12268 819836 1.47 832104 95 13544 808607 1.65 822151 96 11819 793326 1.47 805145 97 11807 770155 1.51 781962 98 12097 715503 1.66 727600 99 7770 494989 1.55 502759 100 8131 443325 1.80 451456 101 12507 724000 1.70 736507 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 120717 136187 46.99 256904 2 105873 120771 46.71 226644 3 117838 138599 45.95 256437 4 108723 157289 40.87 266012 5 49293 202621 19.57 251914 6 29113 108735 21.12 137848 7 25919 115980 18.27 141899 8 26980 107300 20.09 134280 9 24462 95461 20.40 119923 10 27012 105028 20.46 132040 11 28685 100936 22.13 129621 12 28086 96239 22.59 124325 13 28217 94219 23.05 122436 14 30113 95416 23.99 125529 15 28930 88414 24.65 117344 16 27820 85163 24.62 112983 17 32976 92734 26.23 125710 18 32101 90060 26.28 122161 19 30525 85841 26.23 116366 20 28637 83653 25.50 112290 21 29761 82205 26.58 111966 22 29175 83169 25.97 112344 23 28144 80249 25.96 108393 24 26345 76170 25.70 102515 25 28794 80659 26.31 109453 26 26565 76584 25.75 103149 27 28083 77835 26.51 105918 28 26185 73907 26.16 100092 29 27047 76330 26.16 103377 30 26255 71432 26.88 97687 31 25202 71775 25.99 96977 32 24159 67770 26.28 91929 33 26725 69293 27.83 96018 34 25336 71019 26.29 96355 35 30084 74729 28.70 104813 36 25856 69024 27.25 94880 37 26250 69981 27.28 96231 38 23761 67443 26.05 91204 39 24450 65989 27.03 90439 40 26172 66469 28.25 92641 41 23639 64864 26.71 88503 42 23273 65175 26.31 88448 43 23534 64408 26.76 87942 44 22245 62613 26.21 84858 45 26647 66347 28.65 92994 46 21461 58568 26.82 80029 47 21976 59072 27.11 81048 48 21784 59005 26.96 80789 49 21630 59247 26.74 80877 50 20401 56189 26.64 76590 51 20224 54856 26.94 75080 52 20164 55872 26.52 76036 53 20562 54319 27.46 74881 54 20362 54461 27.21 74823 55 20200 54915 26.89 75115 56 19252 52425 26.86 71677 57 19704 52484 27.30 72188 58 19387 51566 27.32 70953 59 18728 49701 27.37 68429 60 19331 50115 27.84 69446 61 17498 48339 26.58 65837 62 17333 48206 26.45 65539 63 18217 47289 27.81 65506 64 17479 46801 27.19 64280 65 16857 44663 27.40 61520 66 18020 45748 28.26 63768 67 16609 46300 26.40 62909 68 17792 46236 27.79 64028 69 16496 43324 27.58 59820 70 15596 43049 26.59 58645 71 15987 41397 27.86 57384 72 15404 41322 27.16 56726 73 15291 42342 26.53 57633 74 14176 40032 26.15 54208 75 14023 38916 26.49 52939 76 14523 38666 27.30 53189 77 14289 38116 27.27 52405 78 14209 38615 26.90 52824 79 13484 37983 26.20 51467 80 13371 37231 26.42 50602 81 13161 36134 26.70 49295 82 13357 36345 26.87 49702 83 13284 35668 27.14 48952 84 14209 37063 27.71 51272 85 12584 34886 26.51 47470 86 12400 34653 26.35 47053 87 12475 33390 27.20 45865 88 12512 33306 27.31 45818 89 12987 33687 27.82 46674 90 12506 33477 27.20 45983 91 11895 33175 26.39 45070 92 11410 31803 26.40 43213 93 11873 31391 27.44 43264 94 11837 31717 27.18 43554 95 11891 31237 27.57 43128 96 11408 30757 27.06 42165 97 12089 31891 27.49 43980 98 11244 28935 27.98 40179 99 9741 0 100.00 9741 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37644 189705 16.56 227349 2 39540 194703 16.88 234243 3 36471 197628 15.58 234099 4 38681 204944 15.88 243625 5 3686 379333 0.96 383019 6 2682 464499 0.57 467181 7 1714 252804 0.67 254518 8 1819 266917 0.68 268736 9 1475 228679 0.64 230154 10 1564 218038 0.71 219602 11 2064 276121 0.74 278185 12 1697 227333 0.74 229030 13 1650 224835 0.73 226485 14 1697 218964 0.77 220661 15 1732 207742 0.83 209474 16 1533 194101 0.78 195634 17 1692 206303 0.81 207995 18 1718 186967 0.91 188685 19 1613 181541 0.88 183154 20 1515 179493 0.84 181008 21 1660 172773 0.95 174433 22 1571 184841 0.84 186412 23 1458 183113 0.79 184571 24 1309 167031 0.78 168340 25 1317 169442 0.77 170759 26 1396 175821 0.79 177217 27 1380 166784 0.82 168164 28 1254 157850 0.79 159104 29 1435 165218 0.86 166653 30 1355 163372 0.82 164727 31 1223 155623 0.78 156846 32 1297 157661 0.82 158958 33 1348 177146 0.76 178494 34 1231 153849 0.79 155080 35 1302 157598 0.82 158900 36 1226 157123 0.77 158349 37 1117 146129 0.76 147246 38 1202 150134 0.79 151336 39 1169 142757 0.81 143926 40 1168 141059 0.82 142227 41 1112 137898 0.80 139010 42 1182 130661 0.90 131843 43 1093 132831 0.82 133924 44 1116 133963 0.83 135079 45 1070 126794 0.84 127864 46 1024 126045 0.81 127069 47 1068 129779 0.82 130847 48 1021 124434 0.81 125455 49 1034 127152 0.81 128186 50 1126 123715 0.90 124841 51 961 116843 0.82 117804 52 969 115206 0.83 116175 53 1059 127579 0.82 128638 54 977 117509 0.82 118486 55 925 115056 0.80 115981 56 993 116862 0.84 117855 57 1025 110096 0.92 111121 58 906 108247 0.83 109153 59 934 111369 0.83 112303 60 1045 107506 0.96 108551 61 861 108059 0.79 108920 62 930 107920 0.85 108850 63 959 107310 0.89 108269 64 899 101642 0.88 102541 65 906 103309 0.87 104215 66 794 98692 0.80 99486 67 900 103410 0.86 104310 68 821 100370 0.81 101191 69 847 99513 0.84 100360 70 852 98290 0.86 99142 71 841 99519 0.84 100360 72 749 93410 0.80 94159 73 747 92074 0.80 92821 74 796 95187 0.83 95983 75 703 91229 0.76 91932 76 701 88021 0.79 88722 77 758 91054 0.83 91812 78 697 86040 0.80 86737 79 736 86116 0.85 86852 80 696 84654 0.82 85350 81 661 81425 0.81 82086 82 706 80212 0.87 80918 83 656 81000 0.80 81656 84 669 78786 0.84 79455 85 688 83764 0.81 84452 86 660 77921 0.84 78581 87 614 77089 0.79 77703 88 629 74405 0.84 75034 89 647 77403 0.83 78050 90 688 74619 0.91 75307 91 644 76239 0.84 76883 92 569 74396 0.76 74965 93 594 71687 0.82 72281 94 612 70904 0.86 71516 95 635 72158 0.87 72793 96 611 68311 0.89 68922 97 580 67710 0.85 68290 98 496 66077 0.75 66573 99 392 0 100.00 392 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56191 275144 16.96 331335 2 45338 229139 16.52 274477 3 45200 228132 16.54 273332 4 42935 215513 16.61 258448 5 7190 421486 1.68 428676 6 6970 577948 1.19 584918 7 8062 787774 1.01 795836 8 8302 777451 1.06 785753 9 8624 734666 1.16 743290 10 8149 751005 1.07 759154 11 8182 734621 1.10 742803 12 8307 686485 1.20 694792 13 7866 708138 1.10 716004 14 7807 708248 1.09 716055 15 7880 718179 1.09 726059 16 7580 685994 1.09 693574 17 7782 679209 1.13 686991 18 7721 677412 1.13 685133 19 7182 636062 1.12 643244 20 7455 662117 1.11 669572 21 7261 632697 1.13 639958 22 7206 613743 1.16 620949 23 7016 601265 1.15 608281 24 6786 579879 1.16 586665 25 6987 578633 1.19 585620 26 6740 573042 1.16 579782 27 7401 604053 1.21 611454 28 6486 581013 1.10 587499 29 6797 564918 1.19 571715 30 6749 552878 1.21 559627 31 6307 546509 1.14 552816 32 6174 532686 1.15 538860 33 6394 525016 1.20 531410 34 6311 516365 1.21 522676 35 6670 530935 1.24 537605 36 6248 523366 1.18 529614 37 6116 519505 1.16 525621 38 6423 540367 1.17 546790 39 6300 499876 1.24 506176 40 5873 518268 1.12 524141 41 5898 492955 1.18 498853 42 5869 499250 1.16 505119 43 5734 478776 1.18 484510 44 5637 475971 1.17 481608 45 5933 476995 1.23 482928 46 5539 479643 1.14 485182 47 5552 468131 1.17 473683 48 5553 459507 1.19 465060 49 5296 463602 1.13 468898 50 5374 457658 1.16 463032 51 5328 447985 1.18 453313 52 5109 429003 1.18 434112 53 4955 426026 1.15 430981 54 4759 416984 1.13 421743 55 4925 424321 1.15 429246 56 4900 414911 1.17 419811 57 4796 422377 1.12 427173 58 4605 409278 1.11 413883 59 4708 394508 1.18 399216 60 4877 404525 1.19 409402 61 4519 389196 1.15 393715 62 4480 387648 1.14 392128 63 4522 384471 1.16 388993 64 4251 374020 1.12 378271 65 4216 374915 1.11 379131 66 4324 363067 1.18 367391 67 4040 361612 1.10 365652 68 4255 371303 1.13 375558 69 4156 359461 1.14 363617 70 3928 348307 1.12 352235 71 4077 346820 1.16 350897 72 4095 341507 1.18 345602 73 3868 340318 1.12 344186 74 3779 339335 1.10 343114 75 3799 336606 1.12 340405 76 3761 324912 1.14 328673 77 3808 322478 1.17 326286 78 3773 322241 1.16 326014 79 3622 324917 1.10 328539 80 3692 313684 1.16 317376 81 3709 313399 1.17 317108 82 3669 309187 1.17 312856 83 3539 304627 1.15 308166 84 3713 301827 1.22 305540 85 3432 298109 1.14 301541 86 3441 296863 1.15 300304 87 3493 292949 1.18 296442 88 3203 285698 1.11 288901 89 3261 284331 1.13 287592 90 3373 281686 1.18 285059 91 3292 280160 1.16 283452 92 3100 276714 1.11 279814 93 3072 272081 1.12 275153 94 3015 268030 1.11 271045 95 3012 265825 1.12 268837 96 2917 259749 1.11 262666 97 2838 259348 1.08 262186 98 2431 247542 0.97 249973 99 1808 0 100.00 1808