CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 152040 223506 40.49 375546 2 144707 252801 36.40 397508 3 142237 243731 36.85 385968 4 150566 219147 40.73 369713 5 148604 192190 43.61 340794 6 151811 155725 49.36 307536 7 168594 148968 53.09 317562 8 82767 176052 31.98 258819 9 73616 163188 31.09 236804 10 73671 159013 31.66 232684 11 76127 161455 32.04 237582 12 73748 161772 31.31 235520 13 73171 162918 30.99 236089 14 69821 165088 29.72 234909 15 68398 165192 29.28 233590 16 64630 167540 27.84 232170 17 61665 162492 27.51 224157 18 62800 165255 27.54 228055 19 61511 165105 27.14 226616 20 63129 167735 27.34 230864 21 62905 168448 27.19 231353 22 61539 165953 27.05 227492 23 61835 164875 27.27 226710 24 60824 165766 26.84 226590 25 59342 163320 26.65 222662 26 59585 163269 26.74 222854 27 59871 166129 26.49 226000 28 61154 166759 26.83 227913 29 59371 164783 26.49 224154 30 58487 164374 26.24 222861 31 59075 162576 26.65 221651 32 58052 160885 26.52 218937 33 58491 162552 26.46 221043 34 59747 161517 27.00 221264 35 58753 161864 26.63 220617 36 58310 163274 26.32 221584 37 56924 158843 26.38 215767 38 56085 157982 26.20 214067 39 58242 160178 26.67 218420 40 57055 158062 26.52 215117 41 56866 158816 26.37 215682 42 58584 160832 26.70 219416 43 57607 159364 26.55 216971 44 56583 158038 26.36 214621 45 58193 157570 26.97 215763 46 57801 158198 26.76 215999 47 56917 155224 26.83 212141 48 56486 155593 26.63 212079 49 58319 156840 27.11 215159 50 57403 156944 26.78 214347 51 56974 156617 26.67 213591 52 57271 157919 26.61 215190 53 55584 152416 26.72 208000 54 55114 152416 26.56 207530 55 54095 149333 26.59 203428 56 53896 148500 26.63 202396 57 54586 150999 26.55 205585 58 54827 150302 26.73 205129 59 54861 148658 26.96 203519 60 53304 148970 26.35 202274 61 53425 146743 26.69 200168 62 52661 145143 26.62 197804 63 51595 145838 26.13 197433 64 50703 143676 26.08 194379 65 51909 142680 26.68 194589 66 52737 143198 26.92 195935 67 51799 141211 26.84 193010 68 50609 141060 26.40 191669 69 50145 140681 26.28 190826 70 50147 138335 26.61 188482 71 48570 136797 26.20 185367 72 48386 136365 26.19 184751 73 47939 134842 26.23 182781 74 47720 133806 26.29 181526 75 46387 133489 25.79 179876 76 46633 131650 26.16 178283 77 47016 130415 26.50 177431 78 46817 131649 26.23 178466 79 45836 128874 26.24 174710 80 45426 129265 26.00 174691 81 44354 128358 25.68 172712 82 43701 125651 25.80 169352 83 44763 126082 26.20 170845 84 44061 125066 26.05 169127 85 43279 123365 25.97 166644 86 42502 120856 26.02 163358 87 41036 120298 25.44 161334 88 41421 118512 25.90 159933 89 40783 119088 25.51 159871 90 40423 118333 25.46 158756 91 39813 116534 25.46 156347 92 39548 115394 25.52 154942 93 39730 115963 25.52 155693 94 38942 113450 25.55 152392 95 38267 111778 25.50 150045 96 38297 112154 25.45 150451 97 37294 108285 25.62 145579 98 35421 102388 25.70 137809 99 27502 80613 25.44 108115 100 35991 101888 26.10 137879 101 33422 101673 24.74 135095 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 169300 344397 32.96 513697 2 93072 335219 21.73 428291 3 42362 329321 11.40 371683 4 24748 315793 7.27 340541 5 17183 280544 5.77 297727 6 13077 258397 4.82 271474 7 10888 326537 3.23 337425 8 4906 358082 1.35 362988 9 4236 338337 1.24 342573 10 4222 326126 1.28 330348 11 4332 323994 1.32 328326 12 4248 318889 1.31 323137 13 3886 312097 1.23 315983 14 3521 311710 1.12 315231 15 3501 319277 1.08 322778 16 3207 319321 0.99 322528 17 3044 316046 0.95 319090 18 2999 313843 0.95 316842 19 3035 314861 0.95 317896 20 2950 328339 0.89 331289 21 3079 330977 0.92 334056 22 3073 327652 0.93 330725 23 3071 331605 0.92 334676 24 3128 333595 0.93 336723 25 3444 326110 1.05 329554 26 3231 327575 0.98 330806 27 3131 332952 0.93 336083 28 2975 331219 0.89 334194 29 3140 334831 0.93 337971 30 3091 337008 0.91 340099 31 3075 328325 0.93 331400 32 3397 333735 1.01 337132 33 3103 334905 0.92 338008 34 3007 329739 0.90 332746 35 3177 328841 0.96 332018 36 3172 330755 0.95 333927 37 3122 321687 0.96 324809 38 3395 328094 1.02 331489 39 3252 325575 0.99 328827 40 3090 325882 0.94 328972 41 3240 325914 0.98 329154 42 3211 324640 0.98 327851 43 3183 320176 0.98 323359 44 3372 324496 1.03 327868 45 3247 323323 0.99 326570 46 3401 320311 1.05 323712 47 3350 321513 1.03 324863 48 3307 326992 1.00 330299 49 3346 319866 1.04 323212 50 3500 318563 1.09 322063 51 3334 320050 1.03 323384 52 3497 318754 1.09 322251 53 3418 314199 1.08 317617 54 3556 317157 1.11 320713 55 3491 312227 1.11 315718 56 3594 315840 1.13 319434 57 3507 312094 1.11 315601 58 3526 310319 1.12 313845 59 3594 310155 1.15 313749 60 3472 309365 1.11 312837 61 3634 305023 1.18 308657 62 3686 306901 1.19 310587 63 3658 302012 1.20 305670 64 3627 301097 1.19 304724 65 3892 301713 1.27 305605 66 3740 295443 1.25 299183 67 3593 290229 1.22 293822 68 3790 291684 1.28 295474 69 3727 289993 1.27 293720 70 3567 284719 1.24 288286 71 3521 283852 1.23 287373 72 3482 282375 1.22 285857 73 3395 279809 1.20 283204 74 3618 277439 1.29 281057 75 3434 277176 1.22 280610 76 3780 268748 1.39 272528 77 3484 269071 1.28 272555 78 3532 265837 1.31 269369 79 3768 259845 1.43 263613 80 3423 261315 1.29 264738 81 3366 258506 1.29 261872 82 3456 254174 1.34 257630 83 3571 256309 1.37 259880 84 3703 256005 1.43 259708 85 3494 252566 1.36 256060 86 3382 251190 1.33 254572 87 3988 251499 1.56 255487 88 4545 241630 1.85 246175 89 3502 245937 1.40 249439 90 3496 244469 1.41 247965 91 3443 242253 1.40 245696 92 3572 242799 1.45 246371 93 3512 238046 1.45 241558 94 3398 234465 1.43 237863 95 3312 231781 1.41 235093 96 3492 228683 1.50 232175 97 3308 210247 1.55 213555 98 2980 192143 1.53 195123 99 1997 127519 1.54 129516 100 2343 128480 1.79 130823 101 4628 210805 2.15 215433 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 234044 468921 33.29 702965 2 110252 505874 17.89 616126 3 58160 560124 9.41 618284 4 49130 598036 7.59 647166 5 45680 706391 6.07 752071 6 36654 776269 4.51 812923 7 31687 970185 3.16 1001872 8 17851 1057721 1.66 1075572 9 14048 966348 1.43 980396 10 13616 926998 1.45 940614 11 14945 925084 1.59 940029 12 13241 931723 1.40 944964 13 13981 944153 1.46 958134 14 14537 966989 1.48 981526 15 13373 989245 1.33 1002618 16 12819 998566 1.27 1011385 17 14450 1009813 1.41 1024263 18 13211 1046421 1.25 1059632 19 13140 1069635 1.21 1082775 20 14504 1100462 1.30 1114966 21 13170 1100903 1.18 1114073 22 13545 1107283 1.21 1120828 23 14773 1109316 1.31 1124089 24 13363 1106400 1.19 1119763 25 14576 1105350 1.30 1119926 26 14809 1119828 1.31 1134637 27 13484 1125981 1.18 1139465 28 13309 1129584 1.16 1142893 29 14539 1127762 1.27 1142301 30 13081 1119978 1.15 1133059 31 13372 1108507 1.19 1121879 32 15108 1100947 1.35 1116055 33 13138 1105999 1.17 1119137 34 13472 1109848 1.20 1123320 35 14637 1101308 1.31 1115945 36 13322 1111080 1.18 1124402 37 12882 1099830 1.16 1112712 38 14061 1102614 1.26 1116675 39 13041 1093507 1.18 1106548 40 13071 1088757 1.19 1101828 41 14537 1093127 1.31 1107664 42 13412 1093146 1.21 1106558 43 13638 1085029 1.24 1098667 44 14228 1090424 1.29 1104652 45 13347 1078699 1.22 1092046 46 13332 1079319 1.22 1092651 47 14234 1077153 1.30 1091387 48 12741 1075288 1.17 1088029 49 13169 1067804 1.22 1080973 50 13943 1058766 1.30 1072709 51 12856 1050990 1.21 1063846 52 13163 1045174 1.24 1058337 53 14142 1034223 1.35 1048365 54 13034 1029770 1.25 1042804 55 12971 1026723 1.25 1039694 56 13982 1025492 1.35 1039474 57 12683 1029981 1.22 1042664 58 12861 1026422 1.24 1039283 59 14108 1026502 1.36 1040610 60 12373 1016893 1.20 1029266 61 13014 1009798 1.27 1022812 62 13452 997525 1.33 1010977 63 12644 991416 1.26 1004060 64 12800 986537 1.28 999337 65 13547 979800 1.36 993347 66 12319 974953 1.25 987272 67 12392 967835 1.26 980227 68 13183 960981 1.35 974164 69 12081 956431 1.25 968512 70 12218 948006 1.27 960224 71 12852 942700 1.34 955552 72 11935 940457 1.25 952392 73 12547 924487 1.34 937034 74 12668 922617 1.35 935285 75 11512 918838 1.24 930350 76 12927 907969 1.40 920896 77 12915 903314 1.41 916229 78 11484 896047 1.27 907531 79 12208 890796 1.35 903004 80 12407 884886 1.38 897293 81 11529 870776 1.31 882305 82 11545 862641 1.32 874186 83 12307 862648 1.41 874955 84 11640 851372 1.35 863012 85 11192 840973 1.31 852165 86 11819 831019 1.40 842838 87 12434 820909 1.49 833343 88 14234 800948 1.75 815182 89 11599 809362 1.41 820961 90 10581 805427 1.30 816008 91 10884 794991 1.35 805875 92 11263 787967 1.41 799230 93 10420 781166 1.32 791586 94 10403 772134 1.33 782537 95 11362 762878 1.47 774240 96 10097 747975 1.33 758072 97 10046 727750 1.36 737796 98 10227 676808 1.49 687035 99 6562 467373 1.38 473935 100 6548 414173 1.56 420721 101 10589 684286 1.52 694875 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 121785 141794 46.20 263579 2 107292 124255 46.34 231547 3 117811 141134 45.50 258945 4 108651 160160 40.42 268811 5 47676 208260 18.63 255936 6 28475 110700 20.46 139175 7 25317 115125 18.03 140442 8 26452 105888 19.99 132340 9 23183 95113 19.60 118296 10 25741 104455 19.77 130196 11 27247 100577 21.32 127824 12 26521 95576 21.72 122097 13 26611 94297 22.01 120908 14 28643 96208 22.94 124851 15 28012 89507 23.84 117519 16 26454 85668 23.59 112122 17 31304 91588 25.47 122892 18 30159 91112 24.87 121271 19 28739 87756 24.67 116495 20 26260 84078 23.80 110338 21 28343 82511 25.57 110854 22 27340 82865 24.81 110205 23 26438 80438 24.74 106876 24 24485 76658 24.21 101143 25 27190 81296 25.06 108486 26 25020 75745 24.83 100765 27 26158 76579 25.46 102737 28 24807 73645 25.20 98452 29 25110 75825 24.88 100935 30 24354 71586 25.38 95940 31 23428 72000 24.55 95428 32 22750 67585 25.18 90335 33 25325 69265 26.77 94590 34 24110 71989 25.09 96099 35 28067 75751 27.03 103818 36 24039 68559 25.96 92598 37 24914 69267 26.45 94181 38 22013 66163 24.96 88176 39 23266 66080 26.04 89346 40 24429 65598 27.14 90027 41 22520 64571 25.86 87091 42 22120 66058 25.09 88178 43 22030 64406 25.49 86436 44 20487 61994 24.84 82481 45 24667 67365 26.80 92032 46 20217 58392 25.72 78609 47 20425 58256 25.96 78681 48 20495 59863 25.50 80358 49 20073 59104 25.35 79177 50 18996 56109 25.29 75105 51 18691 55303 25.26 73994 52 18983 55325 25.55 74308 53 19114 54019 26.14 73133 54 18703 54147 25.67 72850 55 18999 54648 25.80 73647 56 17779 52520 25.29 70299 57 18276 53309 25.53 71585 58 18000 51882 25.76 69882 59 17404 49349 26.07 66753 60 17525 49946 25.97 67471 61 16137 48261 25.06 64398 62 16108 47879 25.17 63987 63 16984 47649 26.28 64633 64 16112 46332 25.80 62444 65 15677 44162 26.20 59839 66 16568 45861 26.54 62429 67 15227 46710 24.58 61937 68 16535 47235 25.93 63770 69 15075 43105 25.91 58180 70 14709 42758 25.60 57467 71 14568 41068 26.18 55636 72 13960 40725 25.53 54685 73 14128 41367 25.46 55495 74 12879 39712 24.49 52591 75 13099 39125 25.08 52224 76 13470 38406 25.97 51876 77 12980 38235 25.34 51215 78 13085 38024 25.60 51109 79 12408 37580 24.82 49988 80 12328 36926 25.03 49254 81 12243 36531 25.10 48774 82 12335 36627 25.19 48962 83 12256 35166 25.84 47422 84 13340 37858 26.06 51198 85 11776 35138 25.10 46914 86 11801 34699 25.38 46500 87 11635 33479 25.79 45114 88 11533 33438 25.65 44971 89 12001 34136 26.01 46137 90 11835 33658 26.01 45493 91 11039 32965 25.09 44004 92 10785 31915 25.26 42700 93 10893 31595 25.64 42488 94 11145 32011 25.82 43156 95 10780 31705 25.37 42485 96 10530 31486 25.06 42016 97 11352 32750 25.74 44102 98 10127 28751 26.05 38878 99 9024 0 100.00 9024 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35140 179815 16.35 214955 2 36356 183803 16.51 220159 3 34293 187467 15.46 221760 4 37179 193945 16.09 231124 5 3590 363137 0.98 366727 6 2796 439434 0.63 442230 7 1678 239016 0.70 240694 8 1729 248864 0.69 250593 9 1515 212689 0.71 214204 10 1468 203324 0.72 204792 11 1960 263399 0.74 265359 12 1636 214702 0.76 216338 13 1625 210608 0.77 212233 14 1566 204025 0.76 205591 15 1584 194447 0.81 196031 16 1442 182482 0.78 183924 17 1601 192157 0.83 193758 18 1561 174458 0.89 176019 19 1504 170129 0.88 171633 20 1420 167912 0.84 169332 21 1442 161646 0.88 163088 22 1418 171896 0.82 173314 23 1324 170952 0.77 172276 24 1264 155625 0.81 156889 25 1290 157064 0.81 158354 26 1409 164499 0.85 165908 27 1324 155282 0.85 156606 28 1168 147775 0.78 148943 29 1409 155001 0.90 156410 30 1201 152567 0.78 153768 31 1254 145210 0.86 146464 32 1096 146995 0.74 148091 33 1300 168988 0.76 170288 34 1150 144510 0.79 145660 35 1204 146843 0.81 148047 36 1094 147675 0.74 148769 37 1131 136931 0.82 138062 38 1193 141062 0.84 142255 39 1164 132833 0.87 133997 40 1093 132882 0.82 133975 41 1041 127803 0.81 128844 42 1018 122614 0.82 123632 43 961 124915 0.76 125876 44 1019 124991 0.81 126010 45 997 117876 0.84 118873 46 967 118570 0.81 119537 47 1094 120184 0.90 121278 48 1031 116265 0.88 117296 49 1006 119660 0.83 120666 50 991 115304 0.85 116295 51 980 109509 0.89 110489 52 907 107558 0.84 108465 53 1019 118529 0.85 119548 54 911 109340 0.83 110251 55 924 107178 0.85 108102 56 913 108199 0.84 109112 57 946 102636 0.91 103582 58 841 100626 0.83 101467 59 909 102862 0.88 103771 60 1007 101001 0.99 102008 61 857 99125 0.86 99982 62 890 101944 0.87 102834 63 882 99729 0.88 100611 64 768 94949 0.80 95717 65 829 95710 0.86 96539 66 778 90713 0.85 91491 67 809 96749 0.83 97558 68 753 93213 0.80 93966 69 776 92810 0.83 93586 70 730 91739 0.79 92469 71 773 93242 0.82 94015 72 767 86869 0.88 87636 73 679 85550 0.79 86229 74 709 87949 0.80 88658 75 728 84082 0.86 84810 76 629 81309 0.77 81938 77 674 84863 0.79 85537 78 687 79894 0.85 80581 79 662 79676 0.82 80338 80 672 78841 0.85 79513 81 609 75353 0.80 75962 82 655 74548 0.87 75203 83 627 74933 0.83 75560 84 599 73573 0.81 74172 85 693 80232 0.86 80925 86 598 72497 0.82 73095 87 569 72387 0.78 72956 88 600 69506 0.86 70106 89 646 71804 0.89 72450 90 672 70551 0.94 71223 91 582 72583 0.80 73165 92 608 69469 0.87 70077 93 531 67020 0.79 67551 94 559 65620 0.84 66179 95 603 67723 0.88 68326 96 549 63965 0.85 64514 97 548 63304 0.86 63852 98 469 62221 0.75 62690 99 333 0 100.00 333 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50492 255272 16.51 305764 2 40110 212172 15.90 252282 3 40480 212757 15.99 253237 4 39604 201404 16.43 241008 5 6277 398596 1.55 404873 6 5893 539286 1.08 545179 7 6901 738509 0.93 745410 8 7010 726347 0.96 733357 9 7356 686867 1.06 694223 10 6618 701906 0.93 708524 11 6885 689439 0.99 696324 12 7016 644680 1.08 651696 13 6450 661334 0.97 667784 14 6786 663143 1.01 669929 15 6834 672569 1.01 679403 16 6360 645521 0.98 651881 17 6658 639911 1.03 646569 18 6744 638190 1.05 644934 19 6073 596667 1.01 602740 20 6315 626023 1.00 632338 21 6237 594780 1.04 601017 22 5972 575091 1.03 581063 23 5846 565157 1.02 571003 24 5633 544358 1.02 549991 25 5842 541172 1.07 547014 26 5618 537822 1.03 543440 27 6269 570666 1.09 576935 28 5490 545276 1.00 550766 29 5743 529634 1.07 535377 30 5693 519233 1.08 524926 31 5350 510648 1.04 515998 32 5113 496488 1.02 501601 33 5393 490283 1.09 495676 34 5278 484218 1.08 489496 35 5719 497584 1.14 503303 36 5215 490984 1.05 496199 37 5027 487236 1.02 492263 38 5477 507320 1.07 512797 39 5182 468065 1.09 473247 40 5032 487439 1.02 492471 41 4988 463601 1.06 468589 42 4996 468742 1.05 473738 43 4811 449566 1.06 454377 44 4651 446361 1.03 451012 45 5035 445174 1.12 450209 46 4558 449384 1.00 453942 47 4701 438182 1.06 442883 48 4756 429496 1.10 434252 49 4462 434718 1.02 439180 50 4602 427998 1.06 432600 51 4378 418553 1.04 422931 52 4095 402217 1.01 406312 53 4164 398840 1.03 403004 54 4082 389864 1.04 393946 55 4201 398944 1.04 403145 56 4046 386639 1.04 390685 57 4052 395860 1.01 399912 58 3810 382844 0.99 386654 59 3852 369199 1.03 373051 60 4156 378424 1.09 382580 61 3744 362824 1.02 366568 62 3753 359835 1.03 363588 63 3792 359732 1.04 363524 64 3635 347909 1.03 351544 65 3498 350694 0.99 354192 66 3613 340002 1.05 343615 67 3433 339988 1.00 343421 68 3607 348380 1.02 351987 69 3596 337298 1.05 340894 70 3365 325894 1.02 329259 71 3502 323146 1.07 326648 72 3422 320801 1.06 324223 73 3177 317567 0.99 320744 74 3247 317380 1.01 320627 75 3209 315450 1.01 318659 76 3041 303868 0.99 306909 77 3201 299805 1.06 303006 78 3323 299772 1.10 303095 79 3105 303488 1.01 306593 80 3088 294471 1.04 297559 81 3135 293217 1.06 296352 82 3054 287728 1.05 290782 83 3034 285506 1.05 288540 84 3106 282429 1.09 285535 85 2903 279268 1.03 282171 86 2930 277393 1.05 280323 87 2875 273245 1.04 276120 88 2749 265688 1.02 268437 89 2816 264150 1.05 266966 90 2878 262861 1.08 265739 91 2711 260687 1.03 263398 92 2598 257573 1.00 260171 93 2623 253309 1.02 255932 94 2586 251375 1.02 253961 95 2565 245720 1.03 248285 96 2444 241490 1.00 243934 97 2321 241459 0.95 243780 98 1964 230576 0.84 232540 99 1445 0 100.00 1445