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Alignment Stats

{{sequences_analysed_in_total}} {{total_sequences_alignments}} {{unique_seqs_text}} {{unique_seqs}} {{no_alignments_text}} {{no_alignments}} {{multiple_alignments_text}} {{multiple_alignments}} Genomic sequence context not extractable (edges of chromosomes) {{no_genomic}}

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Cytosine Methylation

{{meth_unknown}} {{unmeth_unknown}} {{perc_unknown}} Total C's analysed {{total_C_count}} Methylated C's in CpG context {{meth_CpG}} Methylated C's in CHG context {{meth_CHG}} Methylated C's in CHH context {{meth_CHH}} Unmethylated C's in CpG context {{unmeth_CpG}} Unmethylated C's in CHG context {{unmeth_CHG}} Unmethylated C's in CHH context {{unmeth_CHH}} Percentage methylation (CpG context) {{perc_CpG}}% Percentage methylation (CHG context) {{perc_CHG}}% Percentage methylation (CHH context) {{perc_CHH}}%

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Alignment to Individual Bisulfite Strands

OT {{number_OT}} original top strand CTOT {{number_CTOT}} complementary to original top strand CTOB {{number_CTOB}} complementary to original bottom strand OB {{number_OB}} original bottom strand

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Deduplication

Alignments analysed 13724717 Unique alignments 10094686 Duplicates removed 3630031 Duplicated alignments were found at 2189122 different positions

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Cytosine Methylation after Extraction

Total C's analysed 212732771 Methylated C's in CpG context 8409431 Methylated C's in CHG context 937010 Methylated C's in CHH context 2366691 Unmethylated C's in CpG context 21389527 Unmethylated C's in CHG context 42655847 Unmethylated C's in CHH context 136974265 Percentage methylation (CpG context) 28.2% Percentage methylation (CHG context) 2.1% Percentage methylation (CHH context) 1.7%

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M-Bias Plot

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