/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R2_001_val_2.fq.gz
Data processed at 05:18 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
24654280
Paired-end alignments with a unique best hit
10209530
Pairs without alignments under any condition
12327982
Pairs that did not map uniquely
2116768
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
309993582
Methylated C's in CpG context
11855544
Methylated C's in CHG context
1437285
Methylated C's in CHH context
3685251
Methylated C's in Unknown context
57157
Unmethylated C's in CpG context
31961048
Unmethylated C's in CHG context
65204352
Unmethylated C's in CHH context
195850102
Unmethylated C's in Unknown context
677780
Percentage methylation (CpG context)
27.1%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5041243
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5168286
original bottom strand
Deduplication
Alignments analysed
10209529
Unique alignments
7924620
Duplicates removed
2284909
Duplicated alignments were found at 1428268 different positions