EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6423431 lines in total Total number of methylation call strings processed: 12846862 Final Cytosine Methylation Report ================================= Total number of C's analysed: 127237948 Total methylated C's in CpG context: 5351229 Total methylated C's in CHG context: 663359 Total methylated C's in CHH context: 2095978 Total C to T conversions in CpG context: 12254820 Total C to T conversions in CHG context: 26439097 Total C to T conversions in CHH context: 80433465 C methylated in CpG context: 30.4% C methylated in CHG context: 2.4% C methylated in CHH context: 2.5%