CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 97263 137026 41.51 234289 2 93003 149799 38.30 242802 3 94003 138677 40.40 232680 4 100157 123173 44.85 223330 5 97453 108720 47.27 206173 6 96020 91675 51.16 187695 7 105258 91174 53.58 196432 8 55028 102334 34.97 157362 9 48943 95776 33.82 144719 10 49519 94448 34.40 143967 11 51743 98166 34.52 149909 12 50459 97410 34.12 147869 13 49501 101064 32.88 150565 14 48016 100762 32.27 148778 15 46519 101762 31.37 148281 16 43908 101221 30.25 145129 17 42218 100225 29.64 142443 18 42657 101503 29.59 144160 19 41727 102384 28.95 144111 20 42718 103512 29.21 146230 21 42499 104123 28.99 146622 22 41271 102916 28.62 144187 23 41161 102559 28.64 143720 24 40677 102897 28.33 143574 25 40334 101959 28.35 142293 26 40270 101273 28.45 141543 27 40023 103105 27.96 143128 28 41218 102733 28.63 143951 29 39703 102651 27.89 142354 30 39613 103871 27.61 143484 31 40209 102079 28.26 142288 32 39624 100288 28.32 139912 33 39748 101336 28.17 141084 34 40961 101944 28.66 142905 35 39859 101125 28.27 140984 36 39606 101525 28.06 141131 37 38655 100171 27.84 138826 38 38358 99195 27.89 137553 39 38893 101013 27.80 139906 40 38825 99525 28.06 138350 41 38909 99210 28.17 138119 42 39587 100929 28.17 140516 43 39247 99682 28.25 138929 44 38725 99134 28.09 137859 45 39474 99148 28.48 138622 46 39663 99603 28.48 139266 47 38768 97693 28.41 136461 48 38426 98129 28.14 136555 49 39829 98825 28.73 138654 50 38884 99408 28.12 138292 51 38393 98383 28.07 136776 52 39244 100563 28.07 139807 53 38763 97316 28.49 136079 54 37903 96539 28.19 134442 55 37182 94574 28.22 131756 56 37297 94097 28.39 131394 57 37246 94524 28.27 131770 58 37369 95091 28.21 132460 59 37099 94144 28.27 131243 60 36278 93817 27.89 130095 61 36717 92687 28.37 129404 62 36269 92517 28.16 128786 63 35661 92285 27.87 127946 64 35340 91967 27.76 127307 65 35778 90364 28.36 126142 66 36018 91154 28.32 127172 67 35668 89768 28.44 125436 68 35084 89843 28.08 124927 69 35139 89442 28.21 124581 70 34922 88631 28.26 123553 71 34006 86771 28.16 120777 72 33413 86977 27.75 120390 73 33575 85998 28.08 119573 74 33492 85763 28.08 119255 75 32688 84560 27.88 117248 76 32200 84509 27.59 116709 77 32567 83600 28.03 116167 78 32979 83687 28.27 116666 79 32185 82230 28.13 114415 80 31297 82571 27.49 113868 81 31390 81514 27.80 112904 82 30380 81278 27.21 111658 83 30989 80280 27.85 111269 84 31220 80059 28.06 111279 85 30494 78383 28.01 108877 86 29641 77491 27.67 107132 87 28777 76842 27.25 105619 88 29166 76985 27.48 106151 89 28395 75288 27.39 103683 90 28451 75155 27.46 103606 91 28125 73896 27.57 102021 92 27670 73361 27.39 101031 93 27588 74164 27.11 101752 94 27191 73225 27.08 100416 95 27241 72322 27.36 99563 96 26817 71838 27.18 98655 97 26438 69669 27.51 96107 98 24510 65094 27.35 89604 99 19297 51741 27.16 71038 100 25201 65257 27.86 90458 101 23297 64682 26.48 87979 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 111715 225385 33.14 337100 2 63870 213269 23.05 277139 3 30578 205600 12.95 236178 4 17342 207679 7.71 225021 5 11204 185649 5.69 196853 6 9175 179861 4.85 189036 7 7248 215326 3.26 222574 8 3700 230054 1.58 233754 9 3092 220277 1.38 223369 10 3127 216303 1.43 219430 11 3278 217860 1.48 221138 12 3154 219064 1.42 222218 13 3006 213682 1.39 216688 14 2618 212315 1.22 214933 15 2740 216575 1.25 219315 16 2328 217139 1.06 219467 17 2396 213810 1.11 216206 18 2246 214524 1.04 216770 19 2297 213495 1.06 215792 20 2340 221708 1.04 224048 21 2228 224412 0.98 226640 22 2258 221820 1.01 224078 23 2358 225299 1.04 227657 24 2327 227144 1.01 229471 25 2148 221496 0.96 223644 26 2404 222562 1.07 224966 27 2172 225443 0.95 227615 28 2240 223869 0.99 226109 29 2369 226960 1.03 229329 30 2160 228701 0.94 230861 31 2232 222734 0.99 224966 32 2261 226996 0.99 229257 33 2210 227977 0.96 230187 34 2290 222941 1.02 225231 35 2553 224240 1.13 226793 36 2262 225523 0.99 227785 37 2299 219761 1.04 222060 38 2471 223344 1.09 225815 39 2202 223894 0.97 226096 40 2306 222235 1.03 224541 41 2248 221124 1.01 223372 42 2270 221925 1.01 224195 43 2329 219279 1.05 221608 44 2260 221866 1.01 224126 45 2385 220571 1.07 222956 46 2434 220070 1.09 222504 47 2435 219529 1.10 221964 48 2356 222730 1.05 225086 49 2398 216853 1.09 219251 50 2564 215598 1.18 218162 51 2443 218778 1.10 221221 52 2534 217750 1.15 220284 53 2502 214234 1.15 216736 54 2634 217679 1.20 220313 55 2535 213789 1.17 216324 56 2544 214790 1.17 217334 57 2531 214108 1.17 216639 58 2477 211140 1.16 213617 59 2633 213241 1.22 215874 60 2550 212394 1.19 214944 61 2536 208622 1.20 211158 62 2797 210426 1.31 213223 63 2663 208775 1.26 211438 64 2604 207598 1.24 210202 65 2831 206262 1.35 209093 66 2572 203619 1.25 206191 67 2585 198556 1.29 201141 68 2882 201343 1.41 204225 69 2713 199767 1.34 202480 70 2599 195567 1.31 198166 71 2466 195056 1.25 197522 72 2544 194415 1.29 196959 73 2484 193322 1.27 195806 74 2801 191010 1.45 193811 75 2594 190739 1.34 193333 76 2525 186659 1.33 189184 77 2720 185978 1.44 188698 78 2551 184976 1.36 187527 79 2517 180412 1.38 182929 80 2503 180705 1.37 183208 81 2395 178061 1.33 180456 82 2390 175056 1.35 177446 83 2596 177995 1.44 180591 84 2556 178106 1.41 180662 85 2622 174361 1.48 176983 86 2474 173668 1.40 176142 87 2540 174380 1.44 176920 88 2613 170433 1.51 173046 89 2525 168916 1.47 171441 90 2463 167541 1.45 170004 91 2437 166326 1.44 168763 92 2488 166375 1.47 168863 93 2625 163273 1.58 165898 94 2408 159816 1.48 162224 95 2444 158362 1.52 160806 96 2427 157825 1.51 160252 97 2508 143939 1.71 146447 98 2256 132010 1.68 134266 99 1410 86050 1.61 87460 100 1649 87332 1.85 88981 101 3244 143139 2.22 146383 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 164904 343890 32.41 508794 2 85404 361484 19.11 446888 3 44663 388443 10.31 433106 4 36235 422358 7.90 458593 5 33888 480254 6.59 514142 6 27126 513681 5.02 540807 7 22661 623049 3.51 645710 8 15828 661213 2.34 677041 9 11698 618961 1.85 630659 10 11503 603432 1.87 614935 11 13999 606579 2.26 620578 12 11404 606645 1.85 618049 13 12477 613459 1.99 625936 14 14035 627348 2.19 641383 15 11863 641743 1.82 653606 16 11429 646564 1.74 657993 17 13493 652339 2.03 665832 18 11424 671766 1.67 683190 19 11144 683180 1.61 694324 20 13427 703733 1.87 717160 21 11157 704686 1.56 715843 22 11760 709554 1.63 721314 23 13655 710924 1.88 724579 24 11442 711815 1.58 723257 25 11877 713232 1.64 725109 26 13848 717817 1.89 731665 27 11218 721605 1.53 732823 28 11237 724514 1.53 735751 29 13516 722878 1.84 736394 30 11174 718523 1.53 729697 31 11498 711570 1.59 723068 32 12910 714017 1.78 726927 33 11254 714279 1.55 725533 34 12482 716529 1.71 729011 35 13371 709188 1.85 722559 36 11425 718484 1.57 729909 37 11490 710598 1.59 722088 38 13323 712984 1.83 726307 39 11145 708469 1.55 719614 40 11338 704820 1.58 716158 41 13354 708819 1.85 722173 42 11548 711029 1.60 722577 43 11891 705802 1.66 717693 44 13149 708341 1.82 721490 45 11481 703636 1.61 715117 46 11560 703574 1.62 715134 47 13003 699036 1.83 712039 48 11055 698597 1.56 709652 49 11278 692533 1.60 703811 50 12660 689915 1.80 702575 51 10792 685608 1.55 696400 52 11633 682678 1.68 694311 53 12885 675352 1.87 688237 54 11119 675243 1.62 686362 55 11394 668691 1.68 680085 56 13072 668445 1.92 681517 57 10813 673285 1.58 684098 58 11326 671437 1.66 682763 59 12911 670185 1.89 683096 60 10618 663526 1.58 674144 61 11217 658839 1.67 670056 62 12456 650815 1.88 663271 63 11033 648214 1.67 659247 64 11544 642522 1.76 654066 65 12552 638531 1.93 651083 66 10592 634631 1.64 645223 67 10523 631262 1.64 641785 68 12335 629169 1.92 641504 69 10174 624057 1.60 634231 70 10511 620960 1.66 631471 71 11857 616449 1.89 628306 72 10161 616833 1.62 626994 73 11039 604530 1.79 615569 74 11843 603073 1.93 614916 75 9957 598325 1.64 608282 76 10013 595983 1.65 605996 77 11945 591426 1.98 603371 78 9613 586335 1.61 595948 79 9755 582855 1.65 592610 80 11586 578142 1.96 589728 81 9926 569074 1.71 579000 82 10349 564846 1.80 575195 83 11639 563257 2.02 574896 84 9733 557784 1.72 567517 85 10187 548862 1.82 559049 86 10939 542997 1.97 553936 87 9452 541570 1.72 551022 88 9906 535348 1.82 545254 89 10850 529920 2.01 540770 90 9127 528350 1.70 537477 91 9498 520734 1.79 530232 92 10381 515412 1.97 525793 93 8920 511759 1.71 520679 94 9201 504734 1.79 513935 95 10390 497784 2.04 508174 96 8655 488964 1.74 497619 97 8431 474801 1.74 483232 98 9113 441750 2.02 450863 99 5456 306408 1.75 311864 100 5990 272545 2.15 278535 101 9191 446038 2.02 455229 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 90421 95939 48.52 186360 2 75428 78731 48.93 154159 3 82419 89045 48.07 171464 4 75237 99339 43.10 174576 5 33265 128598 20.55 161863 6 20539 70719 22.51 91258 7 17323 72979 19.18 90302 8 18535 66533 21.79 85068 9 16076 58626 21.52 74702 10 17759 63881 21.75 81640 11 18904 62288 23.28 81192 12 18522 59478 23.75 78000 13 18603 58653 24.08 77256 14 19381 59638 24.53 79019 15 19122 54558 25.95 73680 16 17911 52333 25.50 70244 17 21348 56717 27.35 78065 18 20471 55558 26.93 76029 19 19699 54157 26.67 73856 20 18122 51876 25.89 69998 21 18893 50081 27.39 68974 22 18849 51355 26.85 70204 23 17976 49961 26.46 67937 24 16810 46586 26.52 63396 25 18704 49366 27.48 68070 26 17205 46605 26.96 63810 27 18182 47633 27.63 65815 28 16679 45451 26.85 62130 29 17547 47096 27.14 64643 30 16736 44037 27.54 60773 31 15818 44655 26.16 60473 32 15386 41925 26.85 57311 33 17727 42813 29.28 60540 34 16645 45346 26.85 61991 35 20022 48430 29.25 68452 36 16805 42712 28.24 59517 37 17246 43824 28.24 61070 38 15325 41729 26.86 57054 39 15873 41572 27.63 57445 40 17236 41361 29.41 58597 41 15189 40510 27.27 55699 42 15388 41687 26.96 57075 43 15146 40402 27.27 55548 44 14375 38971 26.95 53346 45 17698 43564 28.89 61262 46 13735 36303 27.45 50038 47 14073 37031 27.54 51104 48 14096 37415 27.37 51511 49 13883 37242 27.16 51125 50 12983 35315 26.88 48298 51 12938 34458 27.30 47396 52 12965 35376 26.82 48341 53 13314 34369 27.92 47683 54 13396 34304 28.08 47700 55 13397 34821 27.78 48218 56 12050 33587 26.40 45637 57 12563 33996 26.98 46559 58 12533 33195 27.41 45728 59 11782 30615 27.79 42397 60 12455 31841 28.12 44296 61 10840 30536 26.20 41376 62 11187 30122 27.08 41309 63 12033 30253 28.46 42286 64 11298 29687 27.57 40985 65 11049 28128 28.20 39177 66 11456 29203 28.18 40659 67 10677 29850 26.35 40527 68 11806 30607 27.84 42413 69 10712 27078 28.35 37790 70 10115 27056 27.21 37171 71 10422 26390 28.31 36812 72 9818 25493 27.80 35311 73 10136 26595 27.60 36731 74 9105 25123 26.60 34228 75 9085 25119 26.56 34204 76 9424 24429 27.84 33853 77 9145 24626 27.08 33771 78 9180 24430 27.31 33610 79 8809 24069 26.79 32878 80 8578 23653 26.61 32231 81 8494 23617 26.45 32111 82 8708 23507 27.03 32215 83 8682 22519 27.83 31201 84 9420 24999 27.37 34419 85 8424 22575 27.18 30999 86 8053 22200 26.62 30253 87 8063 21553 27.23 29616 88 7943 21555 26.93 29498 89 8414 22460 27.25 30874 90 8499 21687 28.16 30186 91 7697 20994 26.83 28691 92 7625 20586 27.03 28211 93 7726 20400 27.47 28126 94 7749 20453 27.48 28202 95 7723 20058 27.80 27781 96 7311 20218 26.56 27529 97 8220 21338 27.81 29558 98 7214 18676 27.86 25890 99 6404 0 100.00 6404 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 23720 119515 16.56 143235 2 23975 121057 16.53 145032 3 22178 120653 15.53 142831 4 23747 128968 15.55 152715 5 2464 236401 1.03 238865 6 1984 288141 0.68 290125 7 1246 160476 0.77 161722 8 1330 171023 0.77 172353 9 1152 140596 0.81 141748 10 1076 134297 0.79 135373 11 1513 182841 0.82 184354 12 1168 144324 0.80 145492 13 1205 141325 0.85 142530 14 1179 135523 0.86 136702 15 1135 130352 0.86 131487 16 1042 122884 0.84 123926 17 1122 129853 0.86 130975 18 1206 115646 1.03 116852 19 1037 113241 0.91 114278 20 1014 112236 0.90 113250 21 1118 107125 1.03 108243 22 1058 116532 0.90 117590 23 978 115546 0.84 116524 24 906 104349 0.86 105255 25 1001 105246 0.94 106247 26 1023 109449 0.93 110472 27 918 103518 0.88 104436 28 889 98844 0.89 99733 29 975 105373 0.92 106348 30 870 101919 0.85 102789 31 879 96302 0.90 97181 32 856 99089 0.86 99945 33 925 117143 0.78 118068 34 860 95428 0.89 96288 35 905 99922 0.90 100827 36 866 100470 0.85 101336 37 742 90775 0.81 91517 38 835 96670 0.86 97505 39 767 89718 0.85 90485 40 877 89140 0.97 90017 41 844 86631 0.96 87475 42 762 81969 0.92 82731 43 734 85760 0.85 86494 44 781 83885 0.92 84666 45 720 79299 0.90 80019 46 681 79129 0.85 79810 47 771 81124 0.94 81895 48 735 78009 0.93 78744 49 779 81811 0.94 82590 50 744 77639 0.95 78383 51 707 73991 0.95 74698 52 708 72669 0.96 73377 53 779 80130 0.96 80909 54 706 73520 0.95 74226 55 685 72544 0.94 73229 56 669 73417 0.90 74086 57 737 70050 1.04 70787 58 613 68802 0.88 69415 59 625 70314 0.88 70939 60 721 68561 1.04 69282 61 647 68170 0.94 68817 62 663 69656 0.94 70319 63 637 68723 0.92 69360 64 589 64124 0.91 64713 65 620 66126 0.93 66746 66 539 61240 0.87 61779 67 606 67039 0.90 67645 68 596 63740 0.93 64336 69 591 63569 0.92 64160 70 593 62902 0.93 63495 71 543 64129 0.84 64672 72 534 59954 0.88 60488 73 568 58119 0.97 58687 74 498 60684 0.81 61182 75 497 57893 0.85 58390 76 530 55580 0.94 56110 77 547 58866 0.92 59413 78 501 54812 0.91 55313 79 482 54926 0.87 55408 80 496 53737 0.91 54233 81 478 51784 0.91 52262 82 484 51120 0.94 51604 83 459 51820 0.88 52279 84 471 50587 0.92 51058 85 467 55605 0.83 56072 86 460 50213 0.91 50673 87 467 50286 0.92 50753 88 400 47216 0.84 47616 89 472 49326 0.95 49798 90 502 48839 1.02 49341 91 492 51157 0.95 51649 92 427 48107 0.88 48534 93 401 45849 0.87 46250 94 417 45078 0.92 45495 95 480 46507 1.02 46987 96 415 44092 0.93 44507 97 421 43960 0.95 44381 98 348 43114 0.80 43462 99 276 0 100.00 276 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32325 154739 17.28 187064 2 26331 125933 17.29 152264 3 26749 129756 17.09 156505 4 26026 125944 17.13 151970 5 5621 256432 2.14 262053 6 5249 347729 1.49 352978 7 5986 475222 1.24 481208 8 6294 466860 1.33 473154 9 6266 438566 1.41 444832 10 6296 451882 1.37 458178 11 6388 442615 1.42 449003 12 5819 414492 1.38 420311 13 6024 427253 1.39 433277 14 5873 427241 1.36 433114 15 5782 438362 1.30 444144 16 5605 422091 1.31 427696 17 5891 418969 1.39 424860 18 5670 418769 1.34 424439 19 5375 386762 1.37 392137 20 5586 410200 1.34 415786 21 5359 388046 1.36 393405 22 5383 372062 1.43 377445 23 5209 366874 1.40 372083 24 4934 352336 1.38 357270 25 5081 350840 1.43 355921 26 5071 349050 1.43 354121 27 5169 374858 1.36 380027 28 4924 353820 1.37 358744 29 4917 344997 1.41 349914 30 4810 335844 1.41 340654 31 4766 329776 1.42 334542 32 4605 319165 1.42 323770 33 4683 316066 1.46 320749 34 4787 313940 1.50 318727 35 5249 325531 1.59 330780 36 4445 319591 1.37 324036 37 4596 317805 1.43 322401 38 4793 333200 1.42 337993 39 4419 303393 1.44 307812 40 4404 319557 1.36 323961 41 4412 300155 1.45 304567 42 4355 307628 1.40 311983 43 4312 290500 1.46 294812 44 4161 288184 1.42 292345 45 4262 289386 1.45 293648 46 3992 291301 1.35 295293 47 4039 282416 1.41 286455 48 4018 277173 1.43 281191 49 3969 283605 1.38 287574 50 3934 277136 1.40 281070 51 3799 270192 1.39 273991 52 3709 258403 1.42 262112 53 3651 257590 1.40 261241 54 3388 252109 1.33 255497 55 3649 261113 1.38 264762 56 3466 250822 1.36 254288 57 3476 259191 1.32 262667 58 3326 248860 1.32 252186 59 3260 239857 1.34 243117 60 3474 246049 1.39 249523 61 3360 234919 1.41 238279 62 3287 232154 1.40 235441 63 3260 235354 1.37 238614 64 3174 225163 1.39 228337 65 3080 229610 1.32 232690 66 3144 220981 1.40 224125 67 2957 221415 1.32 224372 68 3146 229841 1.35 232987 69 3133 222506 1.39 225639 70 2972 211892 1.38 214864 71 3000 210238 1.41 213238 72 2903 208515 1.37 211418 73 2919 206757 1.39 209676 74 2775 207090 1.32 209865 75 2774 205116 1.33 207890 76 2707 197030 1.36 199737 77 2804 196527 1.41 199331 78 2687 197502 1.34 200189 79 2671 199357 1.32 202028 80 2756 192581 1.41 195337 81 2741 194479 1.39 197220 82 2667 189364 1.39 192031 83 2631 188059 1.38 190690 84 2712 185871 1.44 188583 85 2594 184194 1.39 186788 86 2541 182113 1.38 184654 87 2550 181391 1.39 183941 88 2367 175049 1.33 177416 89 2466 173205 1.40 175671 90 2393 173088 1.36 175481 91 2498 171569 1.44 174067 92 2351 168609 1.38 170960 93 2241 166761 1.33 169002 94 2277 165670 1.36 167947 95 2273 162011 1.38 164284 96 2052 159086 1.27 161138 97 2084 159247 1.29 161331 98 1807 152942 1.17 154749 99 1277 0 100.00 1277