/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R2_001_val_2.fq.gz
Data processed at 05:18 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
22688467
Paired-end alignments with a unique best hit
8967128
Pairs without alignments under any condition
11891374
Pairs that did not map uniquely
1829965
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
278794431
Methylated C's in CpG context
10658385
Methylated C's in CHG context
1268483
Methylated C's in CHH context
3535297
Methylated C's in Unknown context
54743
Unmethylated C's in CpG context
29012483
Unmethylated C's in CHG context
59889529
Unmethylated C's in CHH context
174430254
Unmethylated C's in Unknown context
615881
Percentage methylation (CpG context)
26.9%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
2.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4393790
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4573338
original bottom strand
Deduplication
Alignments analysed
8967128
Unique alignments
6492386
Duplicates removed
2474742
Duplicated alignments were found at 1499379 different positions
