/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R2_001_val_2.fq.gz
Data processed at 05:17 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
24481250
Paired-end alignments with a unique best hit
10438000
Pairs without alignments under any condition
12046563
Pairs that did not map uniquely
1996687
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
327276929
Methylated C's in CpG context
12357096
Methylated C's in CHG context
2047643
Methylated C's in CHH context
6308688
Methylated C's in Unknown context
65277
Unmethylated C's in CpG context
31908920
Unmethylated C's in CHG context
67977563
Unmethylated C's in CHH context
206677019
Unmethylated C's in Unknown context
705078
Percentage methylation (CpG context)
27.9%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
3.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5166645
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5271355
original bottom strand
Deduplication
Alignments analysed
10438000
Unique alignments
7635088
Duplicates removed
2802912
Duplicated alignments were found at 1823622 different positions