EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6383164 lines in total Total number of methylation call strings processed: 12766328 Final Cytosine Methylation Report ================================= Total number of C's analysed: 122908719 Total methylated C's in CpG context: 4824979 Total methylated C's in CHG context: 612515 Total methylated C's in CHH context: 1827593 Total C to T conversions in CpG context: 12090566 Total C to T conversions in CHG context: 25238601 Total C to T conversions in CHH context: 78314465 C methylated in CpG context: 28.5% C methylated in CHG context: 2.4% C methylated in CHH context: 2.3%