/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R2_001_val_2.fq.gz
Data processed at 05:17 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
22769546
Paired-end alignments with a unique best hit
8267039
Pairs without alignments under any condition
12467371
Pairs that did not map uniquely
2035136
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
238005650
Methylated C's in CpG context
8810888
Methylated C's in CHG context
1190010
Methylated C's in CHH context
3285737
Methylated C's in Unknown context
56519
Unmethylated C's in CpG context
24654378
Unmethylated C's in CHG context
50555362
Unmethylated C's in CHH context
149509275
Unmethylated C's in Unknown context
528637
Percentage methylation (CpG context)
26.3%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
2.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4073674
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4193365
original bottom strand
Deduplication
Alignments analysed
8267039
Unique alignments
6383164
Duplicates removed
1883875
Duplicated alignments were found at 1160963 different positions