Bismark

Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R2_001_val_2.fq.gz

Data processed at 05:17 on 2019-12-21

Alignment Stats

Sequence pairs analysed in total 31922572
Paired-end alignments with a unique best hit 12255649
Pairs without alignments under any condition 16675995
Pairs that did not map uniquely 2990928
Genomic sequence context not extractable (edges of chromosomes) 1

Cytosine Methylation

Total C's analysed 356119849
Methylated C's in CpG context 13819770
Methylated C's in CHG context 1872039
Methylated C's in CHH context 4292886
Methylated C's in Unknown context 84309
Unmethylated C's in CpG context 37264731
Unmethylated C's in CHG context 75867945
Unmethylated C's in CHH context 223002478
Unmethylated C's in Unknown context 787408
Percentage methylation (CpG context) 27.1%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 1.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6034016 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6221632 original bottom strand