/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R2_001_val_2.fq.gz
Data processed at 05:17 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
25226760
Paired-end alignments with a unique best hit
9405544
Pairs without alignments under any condition
13904236
Pairs that did not map uniquely
1916980
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
285373397
Methylated C's in CpG context
11306006
Methylated C's in CHG context
1298778
Methylated C's in CHH context
3449101
Methylated C's in Unknown context
62682
Unmethylated C's in CpG context
28242299
Unmethylated C's in CHG context
60128621
Unmethylated C's in CHH context
180948592
Unmethylated C's in Unknown context
625876
Percentage methylation (CpG context)
28.6%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4637602
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4767942
original bottom strand
Deduplication
Alignments analysed
9405544
Unique alignments
6769523
Duplicates removed
2636021
Duplicated alignments were found at 1665648 different positions