EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10289878 lines in total Total number of methylation call strings processed: 20579756 Final Cytosine Methylation Report ================================= Total number of C's analysed: 222520026 Total methylated C's in CpG context: 8205504 Total methylated C's in CHG context: 1105916 Total methylated C's in CHH context: 1849444 Total C to T conversions in CpG context: 22514794 Total C to T conversions in CHG context: 44690621 Total C to T conversions in CHH context: 144153747 C methylated in CpG context: 26.7% C methylated in CHG context: 2.4% C methylated in CHH context: 1.3%