EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9300124 lines in total Total number of methylation call strings processed: 18600248 Final Cytosine Methylation Report ================================= Total number of C's analysed: 215109906 Total methylated C's in CpG context: 8244675 Total methylated C's in CHG context: 1071477 Total methylated C's in CHH context: 1772832 Total C to T conversions in CpG context: 21307910 Total C to T conversions in CHG context: 42824701 Total C to T conversions in CHH context: 139888311 C methylated in CpG context: 27.9% C methylated in CHG context: 2.4% C methylated in CHH context: 1.3%