CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 213663 325100 39.66 538763 2 197690 347926 36.23 545616 3 172915 297984 36.72 470899 4 168831 216527 43.81 385358 5 159323 179665 47.00 338988 6 159689 153257 51.03 312946 7 173752 146917 54.18 320669 8 79382 170402 31.78 249784 9 71868 155246 31.64 227114 10 71476 147801 32.60 219277 11 73452 150174 32.85 223626 12 70657 155662 31.22 226319 13 68924 160256 30.07 229180 14 65214 158019 29.21 223233 15 62685 159313 28.24 221998 16 57371 156234 26.86 213605 17 54499 150782 26.55 205281 18 55191 152034 26.63 207225 19 54643 155499 26.00 210142 20 55618 156827 26.18 212445 21 57051 158436 26.48 215487 22 55239 156129 26.13 211368 23 55062 155127 26.20 210189 24 53721 154662 25.78 208383 25 52783 153296 25.61 206079 26 52610 150730 25.87 203340 27 52995 155428 25.43 208423 28 54579 153084 26.28 207663 29 53155 159309 25.02 212464 30 52144 154817 25.20 206961 31 52965 151518 25.90 204483 32 51910 146767 26.13 198677 33 52043 148282 25.98 200325 34 53489 147647 26.59 201136 35 51138 146330 25.90 197468 36 51195 148007 25.70 199202 37 49967 145564 25.55 195531 38 49731 145595 25.46 195326 39 51265 147946 25.73 199211 40 51672 145390 26.22 197062 41 51813 146314 26.15 198127 42 52304 148884 26.00 201188 43 51822 147277 26.03 199099 44 51012 145609 25.94 196621 45 51780 144617 26.36 196397 46 52456 145782 26.46 198238 47 52511 143720 26.76 196231 48 52192 144040 26.60 196232 49 52364 143686 26.71 196050 50 50585 146183 25.71 196768 51 51168 146264 25.92 197432 52 50715 151537 25.08 202252 53 49459 143308 25.66 192767 54 49140 142159 25.69 191299 55 48226 137223 26.00 185449 56 47918 135743 26.09 183661 57 48355 137831 25.97 186186 58 48504 136662 26.19 185166 59 48908 136995 26.31 185903 60 47216 137380 25.58 184596 61 47889 134701 26.23 182590 62 46989 138001 25.40 184990 63 46396 135534 25.50 181930 64 46423 135267 25.55 181690 65 46561 132817 25.96 179378 66 47006 133021 26.11 180027 67 46482 131564 26.11 178046 68 45615 130713 25.87 176328 69 44992 129707 25.75 174699 70 44705 129594 25.65 174299 71 44091 128886 25.49 172977 72 43819 128228 25.47 172047 73 43777 126023 25.78 169800 74 43143 124354 25.76 167497 75 42235 124170 25.38 166405 76 41719 122207 25.45 163926 77 42831 121739 26.03 164570 78 42444 122779 25.69 165223 79 41803 121377 25.62 163180 80 41014 121043 25.31 162057 81 41075 120410 25.44 161485 82 39960 119212 25.10 159172 83 40365 119692 25.22 160057 84 40330 120130 25.13 160460 85 40256 118393 25.37 158649 86 39324 116619 25.22 155943 87 38267 115040 24.96 153307 88 39075 115783 25.23 154858 89 37997 113846 25.02 151843 90 37919 113754 25.00 151673 91 37334 111939 25.01 149273 92 36782 111219 24.85 148001 93 36622 111702 24.69 148324 94 37261 110328 25.25 147589 95 36310 109506 24.90 145816 96 36623 111696 24.69 148319 97 35464 107507 24.81 142971 98 33008 100764 24.67 133772 99 25781 79089 24.58 104870 100 33900 101351 25.06 135251 101 31000 99557 23.74 130557 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 297951 300554 49.78 598505 2 177657 266169 40.03 443826 3 66643 262090 20.27 328733 4 29655 274782 9.74 304437 5 16878 257157 6.16 274035 6 13698 249815 5.20 263513 7 10215 321047 3.08 331262 8 4154 347963 1.18 352117 9 3488 320151 1.08 323639 10 3457 303796 1.13 307253 11 3407 307601 1.10 311008 12 3412 306112 1.10 309524 13 2887 293604 0.97 296491 14 2587 293146 0.87 295733 15 2510 299709 0.83 302219 16 2202 299612 0.73 301814 17 2172 298231 0.72 300403 18 2078 295385 0.70 297463 19 2137 294168 0.72 296305 20 2121 309837 0.68 311958 21 2039 315022 0.64 317061 22 2180 312027 0.69 314207 23 2127 313980 0.67 316107 24 2113 314457 0.67 316570 25 2104 306363 0.68 308467 26 2225 310213 0.71 312438 27 2112 310844 0.67 312956 28 2135 311455 0.68 313590 29 2224 313618 0.70 315842 30 2130 317162 0.67 319292 31 2136 309840 0.68 311976 32 2164 311844 0.69 314008 33 2193 312147 0.70 314340 34 2224 305127 0.72 307351 35 2366 308758 0.76 311124 36 2224 307910 0.72 310134 37 2170 301989 0.71 304159 38 2343 305574 0.76 307917 39 2317 304724 0.75 307041 40 2223 301813 0.73 304036 41 2300 301099 0.76 303399 42 2245 300920 0.74 303165 43 2227 298366 0.74 300593 44 2168 303779 0.71 305947 45 2307 302192 0.76 304499 46 2315 298211 0.77 300526 47 2304 298578 0.77 300882 48 2417 302455 0.79 304872 49 2334 297697 0.78 300031 50 2392 298296 0.80 300688 51 2346 299394 0.78 301740 52 2407 298889 0.80 301296 53 2443 296585 0.82 299028 54 2449 297656 0.82 300105 55 2497 293915 0.84 296412 56 2466 296338 0.83 298804 57 2473 295281 0.83 297754 58 2762 291354 0.94 294116 59 2469 294110 0.83 296579 60 2551 294263 0.86 296814 61 2572 293028 0.87 295600 62 2564 294359 0.86 296923 63 2438 289606 0.83 292044 64 2503 291895 0.85 294398 65 2644 288413 0.91 291057 66 2647 283444 0.93 286091 67 2523 276983 0.90 279506 68 2677 279300 0.95 281977 69 2612 279442 0.93 282054 70 2590 275807 0.93 278397 71 2652 275503 0.95 278155 72 2560 271914 0.93 274474 73 2516 270381 0.92 272897 74 2476 267865 0.92 270341 75 2496 268664 0.92 271160 76 2473 263095 0.93 265568 77 2490 264824 0.93 267314 78 2463 261626 0.93 264089 79 2384 257261 0.92 259645 80 2378 256363 0.92 258741 81 2449 252343 0.96 254792 82 2386 250163 0.94 252549 83 2535 254583 0.99 257118 84 2475 253743 0.97 256218 85 2570 250395 1.02 252965 86 2515 252350 0.99 254865 87 2400 251846 0.94 254246 88 2534 247422 1.01 249956 89 2465 245979 0.99 248444 90 2540 244659 1.03 247199 91 2524 243016 1.03 245540 92 2603 242623 1.06 245226 93 2794 241503 1.14 244297 94 2742 236940 1.14 239682 95 2705 235542 1.14 238247 96 2656 234648 1.12 237304 97 2590 214238 1.19 216828 98 2263 196550 1.14 198813 99 1557 127577 1.21 129134 100 1687 129649 1.28 131336 101 3454 211708 1.61 215162 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 235178 318851 42.45 554029 2 103514 336809 23.51 440323 3 44641 459146 8.86 503787 4 36250 500605 6.75 536855 5 31326 605534 4.92 636860 6 24802 671979 3.56 696781 7 23028 872137 2.57 895165 8 11889 937716 1.25 949605 9 9442 858071 1.09 867513 10 9048 838962 1.07 848010 11 9404 840927 1.11 850331 12 8722 863287 1.00 872009 13 9089 883929 1.02 893018 14 9122 907980 0.99 917102 15 8472 931452 0.90 939924 16 8290 953135 0.86 961425 17 9043 959929 0.93 968972 18 8142 997027 0.81 1005169 19 8316 1018807 0.81 1027123 20 9015 1050119 0.85 1059134 21 8386 1052727 0.79 1061113 22 8760 1055036 0.82 1063796 23 9073 1056144 0.85 1065217 24 8401 1057612 0.79 1066013 25 8585 1065127 0.80 1073712 26 9151 1070460 0.85 1079611 27 8495 1073209 0.79 1081704 28 8454 1072425 0.78 1080879 29 9197 1066051 0.86 1075248 30 8202 1054573 0.77 1062775 31 8475 1038270 0.81 1046745 32 9025 1048324 0.85 1057349 33 8218 1038870 0.78 1047088 34 8931 1048782 0.84 1057713 35 9098 1038476 0.87 1047574 36 8505 1047208 0.81 1055713 37 8420 1038624 0.80 1047044 38 9124 1043261 0.87 1052385 39 8328 1034662 0.80 1042990 40 8665 1037932 0.83 1046597 41 9099 1039805 0.87 1048904 42 8742 1048991 0.83 1057733 43 8906 1034147 0.85 1043053 44 9052 1039507 0.86 1048559 45 8487 1028542 0.82 1037029 46 8647 1031545 0.83 1040192 47 9016 1023677 0.87 1032693 48 8502 1026292 0.82 1034794 49 8557 1009285 0.84 1017842 50 8956 1005854 0.88 1014810 51 8158 996632 0.81 1004790 52 8554 992325 0.85 1000879 53 8816 984792 0.89 993608 54 8204 986666 0.82 994870 55 8606 988687 0.86 997293 56 8901 984695 0.90 993596 57 8213 997684 0.82 1005897 58 9426 986126 0.95 995552 59 9026 999014 0.90 1008040 60 8036 982800 0.81 990836 61 8499 979722 0.86 988221 62 8674 970361 0.89 979035 63 8100 961086 0.84 969186 64 8549 956310 0.89 964859 65 8809 957624 0.91 966433 66 8299 950823 0.87 959122 67 8262 947647 0.86 955909 68 8770 944971 0.92 953741 69 7939 939523 0.84 947462 70 8170 936184 0.87 944354 71 8574 928580 0.91 937154 72 7864 926290 0.84 934154 73 8307 914612 0.90 922919 74 8471 915403 0.92 923874 75 7966 911349 0.87 919315 76 8038 906966 0.88 915004 77 8419 899291 0.93 907710 78 7440 893348 0.83 900788 79 7506 890612 0.84 898118 80 8089 885043 0.91 893132 81 7558 874037 0.86 881595 82 7855 866963 0.90 874818 83 8273 871292 0.94 879565 84 7759 860080 0.89 867839 85 7429 851722 0.86 859151 86 7916 847413 0.93 855329 87 7329 843252 0.86 850581 88 7426 838818 0.88 846244 89 7888 831175 0.94 839063 90 7159 825675 0.86 832834 91 7311 819598 0.88 826909 92 7585 818754 0.92 826339 93 7175 810823 0.88 817998 94 7386 803893 0.91 811279 95 7640 795654 0.95 803294 96 7132 779745 0.91 786877 97 6956 761408 0.91 768364 98 7099 706416 0.99 713515 99 4592 487022 0.93 491614 100 4814 435436 1.09 440250 101 7363 714064 1.02 721427 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 112400 143147 43.98 255547 2 98954 128367 43.53 227321 3 108033 143556 42.94 251589 4 101527 162363 38.47 263890 5 44391 199975 18.17 244366 6 26231 108667 19.45 134898 7 23724 116151 16.96 139875 8 25041 108079 18.81 133120 9 22551 96846 18.89 119397 10 25218 106420 19.16 131638 11 26852 103299 20.63 130151 12 26270 99056 20.96 125326 13 26840 97694 21.55 124534 14 28100 98095 22.27 126195 15 27286 91449 22.98 118735 16 26537 89466 22.88 116003 17 31353 98231 24.20 129584 18 30912 92995 24.95 123907 19 28720 89495 24.29 118215 20 27612 87052 24.08 114664 21 29240 86293 25.31 115533 22 28357 87044 24.57 115401 23 26992 84767 24.15 111759 24 25707 79951 24.33 105658 25 28231 86209 24.67 114440 26 26130 82132 24.14 108262 27 27944 82552 25.29 110496 28 26755 80071 25.05 106826 29 27356 82627 24.87 109983 30 25717 77097 25.01 102814 31 24727 77433 24.20 102160 32 24388 73958 24.80 98346 33 26385 75035 26.02 101420 34 25310 76421 24.88 101731 35 30523 81667 27.21 112190 36 26414 74714 26.12 101128 37 26387 76217 25.72 102604 38 23956 72974 24.71 96930 39 24977 72161 25.71 97138 40 26157 73414 26.27 99571 41 23800 70877 25.14 94677 42 23842 71231 25.08 95073 43 24422 71326 25.51 95748 44 22758 69513 24.66 92271 45 27260 73291 27.11 100551 46 22567 65115 25.74 87682 47 22708 65562 25.73 88270 48 21933 65164 25.18 87097 49 21919 64650 25.32 86569 50 20841 63070 24.84 83911 51 20868 61834 25.23 82702 52 20974 62612 25.09 83586 53 21291 60667 25.98 81958 54 21036 61349 25.53 82385 55 20993 61342 25.50 82335 56 19888 59454 25.07 79342 57 20443 58291 25.96 78734 58 19986 58628 25.42 78614 59 19554 56257 25.79 75811 60 20223 56908 26.22 77131 61 18144 54728 24.90 72872 62 18287 55398 24.82 73685 63 19482 54413 26.36 73895 64 18550 53894 25.61 72444 65 17597 51350 25.52 68947 66 18555 52230 26.21 70785 67 17411 53116 24.69 70527 68 18745 53114 26.09 71859 69 17161 49805 25.63 66966 70 16519 50237 24.75 66756 71 17195 48052 26.35 65247 72 16640 48163 25.68 64803 73 16781 49202 25.43 65983 74 15076 46479 24.49 61555 75 15322 45557 25.17 60879 76 15621 45336 25.63 60957 77 15440 45437 25.36 60877 78 15663 45719 25.52 61382 79 14756 44567 24.87 59323 80 14553 44143 24.79 58696 81 14258 43187 24.82 57445 82 14511 43448 25.04 57959 83 14395 41746 25.64 56141 84 15225 44307 25.57 59532 85 14059 42040 25.06 56099 86 13625 41488 24.72 55113 87 13548 40159 25.23 53707 88 13438 39705 25.29 53143 89 14142 40441 25.91 54583 90 13979 39641 26.07 53620 91 13411 39119 25.53 52530 92 12848 38018 25.26 50866 93 12958 37918 25.47 50876 94 12911 38068 25.33 50979 95 12742 37317 25.45 50059 96 12819 37289 25.58 50108 97 13383 38200 25.94 51583 98 12238 34433 26.22 46671 99 10584 0 100.00 10584 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35883 193008 15.68 228891 2 37393 195472 16.06 232865 3 34624 197252 14.93 231876 4 37594 204048 15.56 241642 5 2595 375170 0.69 377765 6 2005 453638 0.44 455643 7 1304 247489 0.52 248793 8 1214 262514 0.46 263728 9 1101 226202 0.48 227303 10 1123 216306 0.52 217429 11 1525 272557 0.56 274082 12 1214 228820 0.53 230034 13 1241 225844 0.55 227085 14 1214 220335 0.55 221549 15 1236 208586 0.59 209822 16 1085 196270 0.55 197355 17 1252 210024 0.59 211276 18 1253 188652 0.66 189905 19 1129 185478 0.61 186607 20 1172 182977 0.64 184149 21 1220 178466 0.68 179686 22 1205 190139 0.63 191344 23 1089 188561 0.57 189650 24 1012 173233 0.58 174245 25 1022 175941 0.58 176963 26 1140 181609 0.62 182749 27 1060 171813 0.61 172873 28 991 163439 0.60 164430 29 1047 171956 0.61 173003 30 1074 170963 0.62 172037 31 996 162688 0.61 163684 32 1012 165144 0.61 166156 33 1119 186004 0.60 187123 34 1011 161816 0.62 162827 35 1031 165949 0.62 166980 36 991 167127 0.59 168118 37 890 153540 0.58 154430 38 989 158583 0.62 159572 39 951 152078 0.62 153029 40 975 150284 0.64 151259 41 942 147118 0.64 148060 42 893 140064 0.63 140957 43 866 142183 0.61 143049 44 855 143398 0.59 144253 45 819 135449 0.60 136268 46 823 137329 0.60 138152 47 892 140154 0.63 141046 48 835 134320 0.62 135155 49 822 135875 0.60 136697 50 794 133565 0.59 134359 51 788 126643 0.62 127431 52 778 126199 0.61 126977 53 855 139961 0.61 140816 54 799 129079 0.62 129878 55 765 125767 0.60 126532 56 817 127290 0.64 128107 57 747 121070 0.61 121817 58 751 117556 0.63 118307 59 695 122775 0.56 123470 60 788 118604 0.66 119392 61 698 119746 0.58 120444 62 711 118544 0.60 119255 63 773 118624 0.65 119397 64 637 113260 0.56 113897 65 693 115140 0.60 115833 66 678 109551 0.62 110229 67 751 114246 0.65 114997 68 660 112354 0.58 113014 69 682 111554 0.61 112236 70 671 110387 0.60 111058 71 692 110767 0.62 111459 72 617 105819 0.58 106436 73 610 103611 0.59 104221 74 644 107273 0.60 107917 75 628 103686 0.60 104314 76 597 98905 0.60 99502 77 657 103282 0.63 103939 78 584 97550 0.60 98134 79 594 97641 0.60 98235 80 603 95662 0.63 96265 81 531 92356 0.57 92887 82 541 91573 0.59 92114 83 532 92021 0.57 92553 84 536 90481 0.59 91017 85 552 95025 0.58 95577 86 521 89050 0.58 89571 87 534 87558 0.61 88092 88 520 84972 0.61 85492 89 590 88228 0.66 88818 90 577 86421 0.66 86998 91 561 87253 0.64 87814 92 536 85155 0.63 85691 93 540 81752 0.66 82292 94 521 81145 0.64 81666 95 580 83369 0.69 83949 96 493 79487 0.62 79980 97 507 78632 0.64 79139 98 443 75823 0.58 76266 99 344 0 100.00 344 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47859 266883 15.21 314742 2 38687 220098 14.95 258785 3 39429 228234 14.73 267663 4 39667 221970 15.16 261637 5 4113 425586 0.96 429699 6 3969 594772 0.66 598741 7 4588 801700 0.57 806288 8 4927 792626 0.62 797553 9 4897 747653 0.65 752550 10 4888 768445 0.63 773333 11 4849 752736 0.64 757585 12 4946 702639 0.70 707585 13 4809 724063 0.66 728872 14 4790 725722 0.66 730512 15 4862 735531 0.66 740393 16 4601 703553 0.65 708154 17 4716 702761 0.67 707477 18 4874 699444 0.69 704318 19 4405 658281 0.66 662686 20 4621 683298 0.67 687919 21 4540 657840 0.69 662380 22 4409 640476 0.68 644885 23 4174 627400 0.66 631574 24 4278 607092 0.70 611370 25 4349 607191 0.71 611540 26 4261 605418 0.70 609679 27 4585 635498 0.72 640083 28 4214 611636 0.68 615850 29 4123 597916 0.68 602039 30 4243 585667 0.72 589910 31 4036 581266 0.69 585302 32 3899 571105 0.68 575004 33 3888 560853 0.69 564741 34 4016 555633 0.72 559649 35 4419 570680 0.77 575099 36 4060 561392 0.72 565452 37 3986 561227 0.71 565213 38 4131 580220 0.71 584351 39 4013 540399 0.74 544412 40 3792 560053 0.67 563845 41 3708 536507 0.69 540215 42 3751 541463 0.69 545214 43 3760 521653 0.72 525413 44 3649 518310 0.70 521959 45 3747 521523 0.71 525270 46 3693 526068 0.70 529761 47 3493 517816 0.67 521309 48 3643 505875 0.71 509518 49 3602 512445 0.70 516047 50 3642 506272 0.71 509914 51 3423 494528 0.69 497951 52 3405 473449 0.71 476854 53 3406 471294 0.72 474700 54 3298 463424 0.71 466722 55 3398 471768 0.72 475166 56 3310 461467 0.71 464777 57 3251 472047 0.68 475298 58 3232 457132 0.70 460364 59 3168 442737 0.71 445905 60 3193 455898 0.70 459091 61 3107 439450 0.70 442557 62 3013 436471 0.69 439484 63 3098 434154 0.71 437252 64 3003 419932 0.71 422935 65 2818 424579 0.66 427397 66 3042 410549 0.74 413591 67 2768 409153 0.67 411921 68 2893 419371 0.69 422264 69 2874 408770 0.70 411644 70 2889 396364 0.72 399253 71 2761 396070 0.69 398831 72 2726 390789 0.69 393515 73 2646 389552 0.67 392198 74 2760 390635 0.70 393395 75 2636 386061 0.68 388697 76 2602 373660 0.69 376262 77 2650 372359 0.71 375009 78 2667 372752 0.71 375419 79 2601 374242 0.69 376843 80 2496 363545 0.68 366041 81 2600 360996 0.72 363596 82 2509 357653 0.70 360162 83 2428 353077 0.68 355505 84 2613 350208 0.74 352821 85 2479 346855 0.71 349334 86 2394 345458 0.69 347852 87 2351 340585 0.69 342936 88 2208 332705 0.66 334913 89 2357 332044 0.70 334401 90 2361 329597 0.71 331958 91 2246 327828 0.68 330074 92 2255 325122 0.69 327377 93 2245 318357 0.70 320602 94 2141 314525 0.68 316666 95 2212 311635 0.70 313847 96 2087 304954 0.68 307041 97 2028 303799 0.66 305827 98 1742 287596 0.60 289338 99 1321 0 100.00 1321