/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-128_S34_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-128_S34_L005_R2_001_val_2.fq.gz
Data processed at 05:17 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
24557803
Paired-end alignments with a unique best hit
11023912
Pairs without alignments under any condition
11430018
Pairs that did not map uniquely
2103873
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
342815591
Methylated C's in CpG context
12084385
Methylated C's in CHG context
1712206
Methylated C's in CHH context
2665031
Methylated C's in Unknown context
47752
Unmethylated C's in CpG context
36262181
Unmethylated C's in CHG context
69681804
Unmethylated C's in CHH context
220409984
Unmethylated C's in Unknown context
723863
Percentage methylation (CpG context)
25.0%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5468345
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5555565
original bottom strand
Deduplication
Alignments analysed
11023910
Unique alignments
9300124
Duplicates removed
1723786
Duplicated alignments were found at 865786 different positions