/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R2_001_val_2.fq.gz
Data processed at 05:17 on 2019-12-21
Alignment Stats
Sequence pairs analysed in total
22262118
Paired-end alignments with a unique best hit
9986595
Pairs without alignments under any condition
10417464
Pairs that did not map uniquely
1858059
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
314010295
Methylated C's in CpG context
11042968
Methylated C's in CHG context
1520028
Methylated C's in CHH context
2541364
Methylated C's in Unknown context
47519
Unmethylated C's in CpG context
33055152
Unmethylated C's in CHG context
64128787
Unmethylated C's in CHH context
201721996
Unmethylated C's in Unknown context
647317
Percentage methylation (CpG context)
25.0%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4954421
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5032173
original bottom strand
Deduplication
Alignments analysed
9986594
Unique alignments
8450079
Duplicates removed
1536515
Duplicated alignments were found at 782021 different positions