EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9854743 lines in total Total number of methylation call strings processed: 19709486 Final Cytosine Methylation Report ================================= Total number of C's analysed: 224084049 Total methylated C's in CpG context: 8423482 Total methylated C's in CHG context: 1104529 Total methylated C's in CHH context: 1867274 Total C to T conversions in CpG context: 22028913 Total C to T conversions in CHG context: 44713152 Total C to T conversions in CHH context: 145946699 C methylated in CpG context: 27.7% C methylated in CHG context: 2.4% C methylated in CHH context: 1.3%